PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g01860.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 385aa MW: 42517.4 Da PI: 7.2854

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g01860.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	28.2	4.2e-09	358	379	1	22
G2-like 1 kprlrWtpeLHerFveaveqLG 22 kpr++W+ eLH++Fv av+qLG Zjn_sc00004.1.g01860.1.am.mk 358 KPRVVWSVELHRKFVAAVNQLG 379 79*******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	3.8E-4	244	276	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-8	356	382	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MFHIFLPPWP WSHDTGSTTA APASPPRLAS EQSTLAFVFQ PVIKWNSQNL QLPLEACGAR 60 APPGPPRRLP SPSPSRLLPS FLPSFLSFLE DLDHPPLRSS NHLELSPSAA VAAAVGAVLV 120 PLCVLSYELR GAFACVLGHL DPRFLPFTCL LLSPPPARLG NGGGAVGSFL ILEASLSPVD 180 KSTRLFFFSS TSRCASRGRF GFAQLRVKFL ACGSIDWDSE IGMLLGAATA RMEEKNGRVS 240 DRERDQFPVG MQVLAVDDDP VCLKVLETLL RRCQYHELRN IWQHVVRRKF SSREHKNLDM 300 YKEPPTADSC HGQSQIVSRA SDQSGRLSKK RKELHSEEED DVDETDFQEG DEPSAAKKPR 360 VVWSVELHRK FVAAVNQLGI DSNDS

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MFHIFLPPWP WSHDTGSTTA APASPPRLAS EQSTLAFVFQ PVIKWNSQNL QLPLEACGAR  60
APPGPPRRLP SPSPSRLLPS FLPSFLSFLE DLDHPPLRSS NHLELSPSAA VAAAVGAVLV  120
PLCVLSYELR GAFACVLGHL DPRFLPFTCL LLSPPPARLG NGGGAVGSFL ILEASLSPVD  180
KSTRLFFFSS TSRCASRGRF GFAQLRVKFL ACGSIDWDSE IGMLLGAATA RMEEKNGRVS  240
DRERDQFPVG MQVLAVDDDP VCLKVLETLL RRCQYHELRN IWQHVVRRKF SSREHKNLDM  300
YKEPPTADSC HGQSQIVSRA SDQSGRLSKK RKELHSEEED DVDETDFQEG DEPSAAKKPR  360
VVWSVELHRK FVAAVNQLGI DSNDS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073624	2e-32	AK073624.1 Oryza sativa Japonica Group cDNA clone:J033048G07, full insert sequence.
GenBank	AK101165	2e-32	AK101165.1 Oryza sativa Japonica Group cDNA clone:J033028D10, full insert sequence.
GenBank	AK102959	2e-32	AK102959.1 Oryza sativa Japonica Group cDNA clone:J033115H14, full insert sequence.
GenBank	AP007226	2e-32	AP007226.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0036B04.
GenBank	AP014962	2e-32	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	2e-32	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP61408	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	8e-17	response regulator 2