PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g01350.1.cf.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 298aa    MW: 32615.2 Da    PI: 4.6429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g01350.1.cf.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-184695255
                             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                    +++G+r+++ +g+W+AeIrdp++     r++lg+f ++eeAa+a++  +++++g
  Zjn_sc00004.1.g01350.1.cf.mkhc 46 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDVEARRIRG 95
                                    69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-3646109IPR001471AP2/ERF domain
CDDcd000189.34E-3346104No hitNo description
SuperFamilySSF541711.24E-2146105IPR016177DNA-binding domain
PROSITE profilePS5103223.45946103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3146105IPR001471AP2/ERF domain
PRINTSPR003672.7E-104758IPR001471AP2/ERF domain
PfamPF008473.6E-114795IPR001471AP2/ERF domain
PRINTSPR003672.7E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
EIESDDVVVK PLAAAPNGAV RDGSNTTTNG IDHPAVRSAK RKRKNQFRGI RQRPWGKWAA  60
EIRDPRKGVR VWLGTFNSPE EAARAYDVEA RRIRGKKAKV NFPDETPVAS QKRCAVPTFV  120
KEPNLDIDEK PIIKPTVNNI TNSNAFSYPV VDYTSHEPVA QPQNIAFTPA MNSTAPIQDS  180
FMNMSSDQGS NTFSCSDFSR ENDTRTPDIT SVLAPIPTMA QVDESAFLQN TGNAMAPPAM  240
GNNSVDLPDL EAYLNFLMDS GSDESINNNL LTSDGSQDGL SNMDLWSFDD IPCSAGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2046103260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-20451101379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436631.11e-134ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-119ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLC5Z5Y31e-133C5Z5Y3_SORBI; Uncharacterized protein
STRINGPavir.Ia01229.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.21e-39related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]