PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g01090.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23436 Da PI: 5.5984 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.3e-19 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr++k +grWvAeIr p++ r r++lg+++t+e+Aa+a +aa +l+g Zjn_sc00004.1.g01090.1.sm.mk 23 RYKGVRRRK-WGRWVAEIRLPNS---RDRIWLGSYDTPEKAARAFDAAFVCLRG 72 7*****998.**********933...5*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.62E-19 | 23 | 83 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.29E-26 | 23 | 84 | No hit | No description |
SMART | SM00380 | 4.6E-30 | 23 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.708 | 23 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-12 | 23 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-27 | 23 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MLTSPQEQEH QHARLPSSGD VRRYKGVRRR KWGRWVAEIR LPNSRDRIWL GSYDTPEKAA 60 RAFDAAFVCL RGPGAADGLN FPSSPPAVAR TSDVDEVYAV AVSYGNNHDT AMVAREEAAV 120 DPPPPRDSML PADNNVAAAA VPPRQLQVST ERLDCWSEFV NNPPPLYSPT WTGSHEHLLP 180 VPVTADVHTD ETESGAFLSL WSFDSSGGSC SWR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 30 | KGVRRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966651.1 | 5e-64 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | K3Y302 | 1e-62 | K3Y302_SETIT; Uncharacterized protein | ||||
STRING | Si008587m | 2e-63 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 1e-32 | ERF family protein |