PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g15270.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 588aa    MW: 62889.1 Da    PI: 7.0559
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g15270.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.61e-822265873374
                          GRAS   3 elLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                    +L e+Ae  ++gd    +a+Larl+++   a  +g+p++R a+yf+eAL+  l+    ++    +p++ ++ ++  ++ a
  Zjn_sc00003.1.g15270.1.am.mk 226 GQLAEAAELAEAGDVLGSRAILARLNNRfpaAPTAGTPLHRCAFYFKEALRVALST---TTG-D-APTAPTPVDVLLKIGA 301
                                   689************************999555566******************99...222.2.45555567899***** PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....ske 156
                                   +k+fsevsP+++f+h+t+ qa+l+++ g+ ++H++Df+i+ G QW++L+q+La+R+ +  sl++T+++s  s+        
  Zjn_sc00003.1.g15270.1.am.mk 302 YKAFSEVSPVVQFAHFTCVQAVLDELGGAGCIHVLDFEIGVGDQWASLMQELAQRR-PGTSLKVTALVSTPSSsphhrLPL 381
                                   ******************************************************95.558******988555567766678 PP

                          GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                   el+ ++e+L++fA+  +vpf+f v+   +le+ ++ e L++  g+a+aV+l +          +++s    +L+lv++l +
  Zjn_sc00003.1.g15270.1.am.mk 382 ELQLVQENLSSFAADARVPFQFAVF---SLESTDPtEILAMAAGDAIAVHLPVGCSVHT---PAMPS----ILHLVRRLGA 452
                                   99**********************8...566665515578888*********9776654...56666....********** PP

                          GRAS 237 kvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                                   k+vv v++ +d+ ++ +F++++++a++ ++ l++sl+a     s +  k+Er l++++i+++v  + +  +    +   Wr
  Zjn_sc00003.1.g15270.1.am.mk 453 KLVVTVDRSCDRrSELPFAAHLFQAFQSCVFLLESLDAV---GSTDSDKIERLLIQPRIESCVVSKYRGAI-AGDRTPPWR 529
                                   ************8999********************998...799999********************955.556699*** PP

                          GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   + l +aGF pv+ s++a++qa++ll+kv+++g+rve++ gsl+l W++ +Lvsv+ Wr
  Zjn_sc00003.1.g15270.1.am.mk 530 ALLASAGFVPVQASSFAEAQADSLLKKVPVRGFRVEKRAGSLLLHWQRGELVSVTTWR 587
                                   *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.841198567IPR005202Transcription factor GRAS
PfamPF035143.5E-80226587IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MLRFLDFHRI SLAQAPGWKG VLLCCGCTAC RLSHSASQLS PSLCRSHTRH TIPSLSSILF  60
SSVLDHHPSA KPKPLPPRSA STLSSPLTDV AALAGATNAK SVSPPPPAWP PGDDDGAPGP  120
GGKEDTSWIH HLPPLDHMSS QQQDNTFLHW IIGGDVSTAQ AMPSGVTEHH PVLADSVLPH  180
QPLPFPPPQP LMFHPSMDIA VTRHQPTAAV LKPTKPEEDD TAAAVGQLAE AAELAEAGDV  240
LGSRAILARL NNRFPAAPTA GTPLHRCAFY FKEALRVALS TTTGDAPTAP TPVDVLLKIG  300
AYKAFSEVSP VVQFAHFTCV QAVLDELGGA GCIHVLDFEI GVGDQWASLM QELAQRRPGT  360
SLKVTALVST PSSSPHHRLP LELQLVQENL SSFAADARVP FQFAVFSLES TDPTEILAMA  420
AGDAIAVHLP VGCSVHTPAM PSILHLVRRL GAKLVVTVDR SCDRRSELPF AAHLFQAFQS  480
CVFLLESLDA VGSTDSDKIE RLLIQPRIES CVVSKYRGAI AGDRTPPWRA LLASAGFVPV  540
QASSFAEAQA DSLLKKVPVR GFRVEKRAGS LLLHWQRGEL VSVTTWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2425658732375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468689.20.0scarecrow-like protein 6
TrEMBLA0A0A9H9V70.0A0A0A9H9V7_ARUDO; Uncharacterized protein
STRINGBRADI1G78230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-73GRAS family protein