PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g14440.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 857aa MW: 93975.4 Da PI: 11.0848

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g14440.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	95.2	4.4e-30	99	203	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed++g W+++++y+++s++yv+tkGW++Fvk+++L++g Zjn_sc00003.1.g14440.1.am.mk 99 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGMPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 179 89*************************955556888*************************************** PP -EEEEEE-.SS.SEE..EEEEE-S CS B3 78 DfvvFkld.gr.sefelvvkvfrk 99 D+v F + g+ +++l++ ++r+ Zjn_sc00003.1.g14440.1.am.mk 180 DTVSFGRGvGEhARGRLFIDWRRR 203 ****655888999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-39	93	207	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.67E-28	96	204	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.01E-23	97	184	No hit	No description
PROSITE profile	PS50863	14.071	99	204	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-20	99	204	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.4E-27	99	203	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence Send to blast
MIVLYYRSRQ LQARVGGHQQ GTTTVHLATT SVRGGREVKA AAALHPGRER GRREVGGVGA 60 AYMPRPQLDH HLAMTTELTA GPIRSGACGI DAVEKEHMFD KVVTPSDVGK LNRLVIPKQH 120 AEKYFPLDAA ANEKGLLLSF EDRTGMPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD 180 TVSFGRGVGE HARGRLFIDW RRRPDPPAPY YQYRIPIPAS VPLAPWAPHG IGGARTVLHH 240 LPSSPSTFYD SHLRRHDAYT PSGRLFYRPH QHQHQQATVV LESVPVRIPT APGHAEPPLV 300 ASSGSKRLRL FGVNLDCAAG SEEENGKSWR SAPPQLPSSP RSSSSSSSGK ASRRPERGSF 360 QSTARKFKRG GGGGRRLEEH LAICESQLGL AFQAAKLLGD ERRHVSFKCG RLGSKRRPSH 420 GLSSSLSRGQ AVMGELQLIC RACQERARTT DPSLWLAPIP RVRPLGEDRP SSECDGGQGS 480 GSSIKTAVVH RNLIYCAGLP SDQRLGRIGE CYGEAVVAGV LPLIAKSADT SPGWDGHLDG 540 KRTDDLAALP ACLGRSTGAA HRNDSNKRST GKNSGQKGCT METRERVWKK SRSAEKNGGV 600 RDTEAISRSW TPAGARAAST HGAFISGHDL IRDETTGTQD TDQTEPGAPT GVPKRQPPWD 660 VWTMGLGLLH RRPAGRRDQS AVRPLFHKAC RMRAAGLDEF RWVVMVPVII HDSLPRSRQV 720 GQVVSLVTAS NLASVERANS AMKGTRHMAQ AQLVSVETNR GRAWGAPATW VGDAVPAREH 780 ILTCAVHVVL LQYSYLNLSV REQGKLSKAH GGKTERGRDR PRLQAKHGAP RFGSRFERES 840 RGQPRRQGKR PAFFPRR

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence Send to blast

MIVLYYRSRQ LQARVGGHQQ GTTTVHLATT SVRGGREVKA AAALHPGRER GRREVGGVGA  60
AYMPRPQLDH HLAMTTELTA GPIRSGACGI DAVEKEHMFD KVVTPSDVGK LNRLVIPKQH  120
AEKYFPLDAA ANEKGLLLSF EDRTGMPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD  180
TVSFGRGVGE HARGRLFIDW RRRPDPPAPY YQYRIPIPAS VPLAPWAPHG IGGARTVLHH  240
LPSSPSTFYD SHLRRHDAYT PSGRLFYRPH QHQHQQATVV LESVPVRIPT APGHAEPPLV  300
ASSGSKRLRL FGVNLDCAAG SEEENGKSWR SAPPQLPSSP RSSSSSSSGK ASRRPERGSF  360
QSTARKFKRG GGGGRRLEEH LAICESQLGL AFQAAKLLGD ERRHVSFKCG RLGSKRRPSH  420
GLSSSLSRGQ AVMGELQLIC RACQERARTT DPSLWLAPIP RVRPLGEDRP SSECDGGQGS  480
GSSIKTAVVH RNLIYCAGLP SDQRLGRIGE CYGEAVVAGV LPLIAKSADT SPGWDGHLDG  540
KRTDDLAALP ACLGRSTGAA HRNDSNKRST GKNSGQKGCT METRERVWKK SRSAEKNGGV  600
RDTEAISRSW TPAGARAAST HGAFISGHDL IRDETTGTQD TDQTEPGAPT GVPKRQPPWD  660
VWTMGLGLLH RRPAGRRDQS AVRPLFHKAC RMRAAGLDEF RWVVMVPVII HDSLPRSRQV  720
GQVVSLVTAS NLASVERANS AMKGTRHMAQ AQLVSVETNR GRAWGAPATW VGDAVPAREH  780
ILTCAVHVVL LQYSYLNLSV REQGKLSKAH GGKTERGRDR PRLQAKHGAP RFGSRFERES  840
RGQPRRQGKR PAFFPRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-58	94	204	3	114	B3 domain-containing transcription factor NGA1
5os9_B	4e-58	94	204	3	114	B3 domain-containing transcription factor NGA1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727001	1e-139	KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP42394	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	5e-66	B3 family protein