PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g14250.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 491aa    MW: 52990.6 Da    PI: 7.7317
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g14250.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.8e-092332701954
                                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Zjn_sc00003.1.g14250.1.am.mk 233 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 270
                                   664459******************************88 PP
2BELL71.51.4e-231101641872
                          BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                    +d+rY++y+eq++ v++ Feavag  +a  Yt+lA+++iSrhFr+L+d i+ q+
  Zjn_sc00003.1.g14250.1.am.mk 110 LLDRRYRRYCEQMRSVAGGFEAVAGERAASAYTALASRTISRHFRNLRDGIVAQL 164
                                   579*************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-631162IPR006563POX domain
PfamPF075261.1E-20106160IPR006563POX domain
PROSITE profilePS5007112.195211274IPR001356Homeobox domain
CDDcd000862.56E-12214275No hitNo description
SMARTSM003896.6E-9214278IPR001356Homeobox domain
SuperFamilySSF466891.63E-17215281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-28217280IPR009057Homeodomain-like
PfamPF059206.1E-18231270IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MVAGRVHLRL GQGRVPFPGP RPSLLETSIP LPFFRYLLSL HEACWPGPLP SRPAFQFPVT  60
PVSAQRHDTG SASLLLFFSA CCSTASPLRM PIPCHSILNA SAHTTQFLLL LDRRYRRYCE  120
QMRSVAGGFE AVAGERAASA YTALASRTIS RHFRNLRDGI VAQLQAARKA LGEKDVGVRG  180
MTCGETPRLR VLDQCIRQQK ALNLQAGMME SQPWRPQRGL PERAVTILRA WLFEHFLHPY  240
PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY VEEMKGEQQH DDGGGSSGGG  300
HVNPNPSISE ASELAYNVGR QHGVSETADG GSNNGIDRKP TREQLLHDAG SLAAVVSVGS  360
GVACAGPGGG ARLLESFGVM DHLDFDAYDD DGHHQAAGGF GSVSLTLGLQ QHSGSRGESG  420
GVNIAFGAPP SSAHHGGYLF AAPGHQQMEG GDHHQYVQLG AAMDGGEAPQ GQEHYRNLSA  480
AGFHLLRDLA G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A3e-17220278159Homeobox protein Meis2
5bng_B3e-17220278159Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579621e-178EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds.
GenBankEU9579801e-178EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985907.11e-160homeobox protein BEL1 homolog
RefseqXP_012698473.11e-160homeobox protein BEL1 homolog
RefseqXP_012698474.11e-160homeobox protein BEL1 homolog
TrEMBLA0A1E5UVC11e-164A0A1E5UVC1_9POAL; Homeobox protein BEL1-like protein
STRINGSi034720m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-74TALE family protein