PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00003.1.g12340.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 24323 Da PI: 6.064 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.5 | 2.6e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasn +kll++lp +r++a+ ++ yeA+ar+rdP+yG+v+ Zjn_sc00003.1.g12340.1.sm.mkhc 7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNASKLLAHLPLADRPEAAVTISYEAQARLRDPIYGCVA 85 7*************************89*************************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +i++lqqq+++l+a+la+lk++ Zjn_sc00003.1.g12340.1.sm.mkhc 86 HIFALQQQVMTLQAQLASLKAQ 107 *****************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.205 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KLLAHLPLAD 60 RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAQAAQ GQGVHEDAKG 120 FMGSAAEQLG YCYSWYSNSN GGGASAAAPA AQPCAYSNGG LTALLESDYM QQSLYHAGSD 180 DDGQQAMAYE AAVESSSFGA EESGWRSSSG YQDCEDLQSV AYAYLNHRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF051732 | 1e-158 | EF051732.1 Zea mays rootless concerning crown and seminal lateral roots (rtcs) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797613.1 | 1e-132 | LOB domain-containing protein CRL1-like | ||||
Swissprot | Q5UG13 | 1e-104 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A2S3IU95 | 1e-130 | A0A2S3IU95_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CHM3 | 1e-130 | A0A2T7CHM3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00283.1.p | 1e-134 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 5e-58 | LBD family protein |
Publications ? help Back to Top | |||
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