PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g11400.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 349aa    MW: 38222.5 Da    PI: 7.0313
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g11400.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.5e-091161531954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  Zjn_sc00003.1.g11400.1.sm.mkhc 116 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 153
                                     664459******************************88 PP
2BELL77.71.7e-252492572
                            BELL 25 qyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                                    +y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai  q+
  Zjn_sc00003.1.g11400.1.sm.mkhc  2 HYRHQMQIVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAIGVQV 49
                                    9*******************************************8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.3E-20245IPR006563POX domain
PROSITE profilePS5007112.00194157IPR001356Homeobox domain
CDDcd000861.00E-1297158No hitNo description
SMARTSM003891.7E-997161IPR001356Homeobox domain
SuperFamilySSF466892.05E-1798164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-28100163IPR009057Homeodomain-like
PfamPF059202.3E-17114153IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MHYRHQMQIV MSSFDAVAGA GAARPYTALA LQTISRHFRS LRDAIGVQVQ FLRRSLGEKD  60
TSAQGGGLSR LRYIDQHLRQ QRAMQQFGMM QQPQHAWRPQ RGLPESAVSV LRAWLFEHFL  120
HPYPKDSEKL MLARQTGLSR GQVSNWFINA RVRLWKPMIE EMYKEEFGAE MDSHSSSENA  180
GNKGKDEAIS SEDHDEFQSP SSAAKHGGAG HHHLNTFKSE ALGGIDVGLS SLDGAMGTYA  240
TSLNLSHHAP GAIGTVNSGS SLLQDALAHH HHGGDARFVS YGDMAGHLGG YDGGSVSLTL  300
GLQHRNDAGT VPAEQQGLLY GNAGDFEFMN GGEDRQRFGS SQLFHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-17103160158Homeobox protein Meis1
4xrs_B1e-17103160158Homeobox protein Meis1
5bng_A1e-17103161159Homeobox protein Meis2
5bng_B1e-17103161159Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560460.0BT056046.1 Zea mays full-length cDNA clone ZM_BFc0159G01 mRNA, complete cds.
GenBankKJ7284970.0KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985591.10.0BEL1-like homeodomain protein 7
RefseqXP_004985592.10.0BEL1-like homeodomain protein 7
RefseqXP_004985593.10.0BEL1-like homeodomain protein 7
RefseqXP_004985594.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW12e-98BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A1E5W1C90.0A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRINGSi034960m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-90BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]