PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g11150.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 436aa MW: 46349.7 Da PI: 8.0671

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g11150.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.9e-40	103	163	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Zjn_sc00003.1.g11150.1.sm.mkhc 103 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 163 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	99	152	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	105	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	107	161	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	109	145	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MAKCRAEGGG GGGGDCLIKL FGKTIPVPEA AAAAAAGDAD KDLQQSGSSA TEPKGQETTL 60 QDSSGSPPQQ GVTDTEESSA EKNSSSDQQQ GETTNNKEKL KKPDKILPCP RCNSMDTKFC 120 YYNNYNINQP RHFCKNCQRY WTAGGAMRNV PVGAGRRKSK SASAASQFLQ RVRAALPIDP 180 LCTSARTNGT VLSFGSDMSS LELAEQMKHL KEKLVPITRI KNSDDQSAGS YAEGGSAKGQ 240 EPKLIDQKEQ VTADKSANIV QHPCMNGVTM WPFSCTPPLA CYTSGIPIPF YPAAAGYWGC 300 MVPGAWNTPW LPHSQSETTT SPSAASPASA KSNCFTSGKR PRDGDEEGNT TGNGKVWVPK 360 TIRIDDADEV ARSSILSFIG INGDKGGKDS KGCKLSSVFE QKDESKTATH AVIDSLPFLR 420 GNPAALSRSL TFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MAKCRAEGGG GGGGDCLIKL FGKTIPVPEA AAAAAAGDAD KDLQQSGSSA TEPKGQETTL  60
QDSSGSPPQQ GVTDTEESSA EKNSSSDQQQ GETTNNKEKL KKPDKILPCP RCNSMDTKFC  120
YYNNYNINQP RHFCKNCQRY WTAGGAMRNV PVGAGRRKSK SASAASQFLQ RVRAALPIDP  180
LCTSARTNGT VLSFGSDMSS LELAEQMKHL KEKLVPITRI KNSDDQSAGS YAEGGSAKGQ  240
EPKLIDQKEQ VTADKSANIV QHPCMNGVTM WPFSCTPPLA CYTSGIPIPF YPAAAGYWGC  300
MVPGAWNTPW LPHSQSETTT SPSAASPASA KSNCFTSGKR PRDGDEEGNT TGNGKVWVPK  360
TIRIDDADEV ARSSILSFIG INGDKGGKDS KGCKLSSVFE QKDESKTATH AVIDSLPFLR  420
GNPAALSRSL TFQEGS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985552.1	0.0	cyclic dof factor 1
TrEMBL	C7EAG3	0.0	C7EAG3_ELECO; Dof-type zinc finger protein
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	5e-54	cycling DOF factor 3