PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g09970.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 529aa    MW: 57304.6 Da    PI: 9.4945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g09970.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.3e-14307358155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Zjn_sc00003.1.g09970.1.am.mk 307 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 358
                                   79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.10E-14305362No hitNo description
Gene3DG3DSA:4.10.280.109.0E-14306362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-17306370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.904306357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-11307358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11312363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MGSKQVEPWP VVTASSLLLD ACGYQANQAV TPGINSIAVA GVACRTAHRL PGQEAEGDRD  60
GRMGAAKSGT THRGIGRIQS YSGVCHCAEA RHTELEQDEQ EDTIGCWRRR APGYSYAACR  120
PAHLGGVSWP GNEQRRENIR PRAESLVNHC LVRPPKHKTP PVARGPGCRV RVRLAHLTRP  180
PSYKTRHRRA ASPRRTHIHT PAVVFSQQAG GHFGYGRVDS PYALPWCDLP GSAGFGFAGA  240
GWDPDGLHAS VAAPDVVDEW ETASAKQDQS SEASTEGKRA AVPAAAPERR KRRRTKVVKN  300
KEEIETQRMT HIAVERNRRR QMNEYLAVLR SLMPPSYAHR GDQASIVGGA INYVRELEQL  360
LQSLEVQRSI KNRVGCSCTD AAGKSPFAGF FTFPQYSTSS THAGCGTATT ASSSNSTSSV  420
VTGDAAGSAT TARPAAVADI EVTMVEGHAS LKVLARRRPK QLLRLVAALQ QLRVPPLHLN  480
VTSLDGMVLY TFSLKVEDDS RMGPVEDIAT AVHEILSSIQ KQEEETAVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289293RKRRR
2289294RKRRRT
3307318RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9613979e-91EU961397.1 Zea mays clone 235094 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796362.11e-137transcription factor bHLH94-like
TrEMBLA0A0A9F3U91e-142A0A0A9F3U9_ARUDO; Uncharacterized protein
STRINGPavir.J40759.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-49bHLH family protein