PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g09620.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 207aa MW: 22705.9 Da PI: 7.3083

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g09620.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	195.7	3e-60	2	164	97	258
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173 aN aI eav+ge+ +HiiDf+i qG QW++++qaLa+Rp+ p+lRiTg+++++s + l+ +g+rL+++A+++g Zjn_sc00003.1.g09620.1.sm.mkhc 2 SANGAIAEAVKGENFIHIIDFQIAQGSQWITMIQALAARPGRRPHLRITGIDDSNSAhaRGGGLNIVGQRLHNIAQSCG 80 79*************************************************8888889999************ PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252 ++fefn+ v + +++ +e+L v+pgEa+aVn+++qlh+++desv +e++rd++L++vkslsP+vv++veqea++n+++ Zjn_sc00003.1.g09620.1.sm.mkhc 81 LSFEFNA-VPAASHEVMFEHLVVRPGEAIAVNFAYQLHHTPDESVGIENHRDRILRMVKSLSPRVVTLVEQEANTNTAP 158 ***.79999999*********************************************************** PP GRAS 253 Flerfl 258 F+ rf+ Zjn_sc00003.1.g09620.1.sm.mkhc 159 FFLRFF 164 9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.148	1	207	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-57	2	164	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSANGAIAEA VKGENFIHII DFQIAQGSQW ITMIQALAAR PGRRPHLRIT GIDDSNSAHA 60 RGGGLNIVGQ RLHNIAQSCG LSFEFNAVPA ASHEVMFEHL VVRPGEAIAV NFAYQLHHTP 120 DESVGIENHR DRILRMVKSL SPRVVTLVEQ EANTNTAPFF LRFFCGFVSV IMVEPKCHSD 180 YSNPKQVRCI AQLTSAFTII ADSNGCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-29	1	163	95	255	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791443.1	1e-105	scarecrow-like protein 21
Refseq	XP_025791444.1	1e-105	scarecrow-like protein 21
Refseq	XP_025791446.1	1e-105	scarecrow-like protein 21
Refseq	XP_025791447.1	1e-105	scarecrow-like protein 21
Swissprot	Q9LDL7	2e-73	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A3L6S405	1e-104	A0A3L6S405_PANMI; Scarecrow-like protein 21
STRING	Si035089m	1e-104	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1513	37	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	9e-76	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]