PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g09260.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 643aa MW: 68081.4 Da PI: 10.5244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g09260.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Zjn_sc00003.1.g09260.1.am.mk 168 FFCEICSKGFQRDQNLQLHRRGH 190 67*******************88 PP
2	zf-C2H2	13.4	0.00023	244	266	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Zjn_sc00003.1.g09260.1.am.mk 244 WKCDKCDKKYAVQSDWKAHVKIC 266 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.3E-4	167	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.29E-7	167	190	No hit	No description
PROSITE profile	PS50157	10.658	168	190	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.093	168	190	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	170	190	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	209	239	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	232	265	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.29E-7	239	264	No hit	No description
SMART	SM00355	71	244	264	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MQPVLLHFDP SLLSAHGDRL ETITIAFRLN QWRARGPVRV PKPDANPRHR LPPRGRHGAL 60 TAYGFLAPCC LSPQAARQRS SSRRPVARPG TRVVRFGRRP TAIRKETTGE MEVEATTTTT 120 AASSSGRAPQ LPPPGPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFFC EICSKGFQRD 180 QNLQLHRRGH NLPWKLRQRS GKEPRKRVYV CPEPSCVHHD PTRALGDLTG IKKHFCRKHG 240 EKKWKCDKCD KKYAVQSDWK AHVKICGSRE YRCDCGTLFS RRDSFITHRA FCDALAEENA 300 NARAGAAEEE NGSSAAVGPP PAPPPTQAPP PAAPAPLKQQ PHPPFPAAAP APHHAEQRNE 360 RETNASEPVQ FTPPPQQAPL PVSSQAPATA ANVSISSSTS SVVASSQSQI GGGLFAPSSM 420 APAPQFTNLG PERALPVKPP PLCLSTDASS SIFAAPVASD RQLRIAPPPP PSPSPHMSAT 480 ALLQKAAQMG ATSSRSSFLR GLGLDVSTSS PGPSSSGQPR HAETPLQQWP LRLETEAAAP 540 TLSAGLGLGL PYDSTGATVC LPELMMGQSP LFAAKPATLD FLGLGMSPTA GASASRGLSA 600 FIQPIGGAVG IGGSSARAAE AFGAGHGAQA KPWERNPSSS QIL

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MQPVLLHFDP SLLSAHGDRL ETITIAFRLN QWRARGPVRV PKPDANPRHR LPPRGRHGAL  60
TAYGFLAPCC LSPQAARQRS SSRRPVARPG TRVVRFGRRP TAIRKETTGE MEVEATTTTT  120
AASSSGRAPQ LPPPGPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFFC EICSKGFQRD  180
QNLQLHRRGH NLPWKLRQRS GKEPRKRVYV CPEPSCVHHD PTRALGDLTG IKKHFCRKHG  240
EKKWKCDKCD KKYAVQSDWK AHVKICGSRE YRCDCGTLFS RRDSFITHRA FCDALAEENA  300
NARAGAAEEE NGSSAAVGPP PAPPPTQAPP PAAPAPLKQQ PHPPFPAAAP APHHAEQRNE  360
RETNASEPVQ FTPPPQQAPL PVSSQAPATA ANVSISSSTS SVVASSQSQI GGGLFAPSSM  420
APAPQFTNLG PERALPVKPP PLCLSTDASS SIFAAPVASD RQLRIAPPPP PSPSPHMSAT  480
ALLQKAAQMG ATSSRSSFLR GLGLDVSTSS PGPSSSGQPR HAETPLQQWP LRLETEAAAP  540
TLSAGLGLGL PYDSTGATVC LPELMMGQSP LFAAKPATLD FLGLGMSPTA GASASRGLSA  600
FIQPIGGAVG IGGSSARAAE AFGAGHGAQA KPWERNPSSS QIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	240	300	3	63	Zinc finger protein JACKDAW
5b3h_F	2e-33	240	300	3	63	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054502	0.0	BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
GenBank	BT054618	0.0	BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBank	EU955578	0.0	EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985335.1	0.0	protein indeterminate-domain 1
Swissprot	Q9LVQ7	1e-138	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	K4A877	0.0	K4A877_SETIT; Uncharacterized protein
STRING	Si035083m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	8e-89	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]