PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g06420.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 661aa    MW: 70776.7 Da    PI: 9.905
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g06420.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.86.3e-37384476192
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i
  Zjn_sc00003.1.g06420.1.am.mk 384 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 464
                                   7***********************9989***************************************************** PP

                        DUF260  81 lklqqqleqlka 92 
                                   ++lqqq e+++a
  Zjn_sc00003.1.g06420.1.am.mk 465 FALQQQCEKKHA 476
                                   *******98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.789383486IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-36384476IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MLLVTCRILP LRFRLRSTSS GINPKDLPAK ERFLLAWNSE LRGRVEQHLG VLHLLAVALL  60
GFQGGGSATS SLKAIEKCPG GDGPLASDLS QALASISVPD HHMDCRVHQQ LNESNVTRQH  120
PAFLEAASQR YSSSPPAGAE RSRDFVEVTR GTGKRLRVFA IRDVRQERRG GPYVAMFDRA  180
RELWHVEVKR VGERNAMRRI TWRERERKSP VLFQRNVGAR DDSGAGALAA QQWMLSDLPP  240
IGQNQTGGVQ RLFHVYTYAL PSSVLFYIAI PPGPPPFFLS GLSPLQSLLP SASIPACLPA  300
CLSEPADAAL VLSLQIERPR PASGGGSEKE QAVIRCSLLE RGRPGHVPER AMSSGGGGTS  360
TLGGGGGPSG SGGPGGGGGG GGGPCGACKF LRRKCVSGCI FAPYFDSEQG AAHFAAVHKV  420
FGASNVSKLL LQIPAHKRLD AVVTICYEAQ ARLRDPVYGC VAHIFALQQQ CEKKHASPLN  480
LESCCLPSTP GGEYYARLVR RRAIHRSRPT PPPVAPRTHH ARTHAVNLQA ELTYLQAHLA  540
TMELPSPPPP PAPPQMPVPA PFSISDLPSA SNVPSTVDLS ALFDTPPQAH QWAAVQQHHQ  600
QHQLRQPTTS YGASVRGGPG MAESSSGGGG GDLQALAREL LDRHRSGIKL ESPPPPPPHS  660
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-32380470796LOB family transfactor Ramosa2.1
5ly0_B4e-32380470796LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0614311e-124BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.15e-52LOB domain-containing protein 18