PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g06200.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 80aa    MW: 8649.34 Da    PI: 7.3534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g06200.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.4e-12242344
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                                  +W+t E e++ +a + +G++ W+++a+ +g g+t  +++ ++
  Zjn_sc00003.1.g06200.1.sm.mk  2 SWSTSENERFERALATYGSD-WERVAAAVGGGKTVDDVRRHY 42
                                  7*******************.********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002494.6E-10142IPR001005SANT/Myb domain
PROSITE profilePS5129313.956150IPR017884SANT domain
SMARTSM007172.2E-4248IPR001005SANT/Myb domain
CDDcd001673.64E-7242No hitNo description
SuperFamilySSF466898.97E-12251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-6242IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSWSTSENER FERALATYGS DWERVAAAVG GGKTVDDVRR HYALLVEDVG CIESGGYGYP  60
NGSAGNGNRN NRGRANRPQA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313364.14e-30protein RADIALIS-like 3
SwissprotQ6NNN02e-16RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLI1H7D61e-28I1H7D6_BRADI; Uncharacterized protein
STRINGMLOC_69872.14e-32(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-16RAD-like 1