PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00003.1.g05050.1.cf.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 731aa MW: 82039.6 Da PI: 6.8833 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 394.1 | 1.5e-120 | 356 | 727 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla++f+ +L+arla+++s+ly++l +++t+ s+ l+ Zjn_sc00003.1.g05050.1.cf.mkhc 356 LRTILIQCAQAVAADDRRSASELLKQIRQHSKPNGDGTQRLAHCFADGLEARLAGTGSQLYHQLVAKRTT---ASDMLK 431 5789************************************************************999999...9***** PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156 a++l+ ++P+ ++sh++ Nq+Il ++++++vHiiDf+i G+QWp+L++ L++R++gpp lRiTg++ p++g +e Zjn_sc00003.1.g05050.1.cf.mkhc 432 AYHLYLAACPFKRLSHFLSNQTILSMIKNATKVHIIDFGIYFGFQWPCLIRRLSKREGGPPLLRITGIDVPQPGfrPTE 510 *************************************************************************9***** PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 ++eetg+rLa++A+++ vpfe++ +a+++e+++ e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++ Zjn_sc00003.1.g05050.1.cf.mkhc 511 RIEETGHRLAEYARKFAVPFEYQG-IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVN 588 ************************.7***************************************************** PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 P ++++ + +++ + F +rf eal ++salfd+lea++pr++ +r+ +Er l+gre+ nv+aceg++r+er et+++ Zjn_sc00003.1.g05050.1.cf.mkhc 589 PAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLEATVPRDDAQRALIERDLFGREALNVIACEGSDRVERPETYKQ 667 ******************************************************************************* PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 W+ r +aGF +++ls++++++ak+ ++ ++ + + ++e+sg+l++gWk+r ++++SaW+ Zjn_sc00003.1.g05050.1.cf.mkhc 668 WQVRNLRAGFVQAQLSQDIVTKAKAKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAMSAWK 727 *******************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.47 | 330 | 707 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-118 | 356 | 727 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MGLDNTYGEL SGMFCGGLSY DGFTDRSGSS DYFSFLNSQP EIVPQIATAP SSNPSSAISR 60 TNTETDNPED WEFISDESLN YISRMLMEED IDEKVSMYQA ESAALHAAAK PFYDILGHKF 120 PPSPDHQLIP WSLDSPVESG NSSHAQSYAS TATSSIGGAV DSNRRYDIGR SEQLALYGDL 180 RVQSSLPVLG PSSDACNEVS VLEDPLITNG RIPDYLFESL PTWDFRRGAE KAQKFLPGSD 240 KLVIDLEAGA VARPKEASKN VSPSTRKAEV LNTKKNRQSE DLDVLEGRSI KQSAFSSEEP 300 DWIEMFDDLL TEKKATVLRE MMRNEASKNS QVTQTKAPSG PRQRGRKPTK RDVVDLRTIL 360 IQCAQAVAAD DRRSASELLK QIRQHSKPNG DGTQRLAHCF ADGLEARLAG TGSQLYHQLV 420 AKRTTASDML KAYHLYLAAC PFKRLSHFLS NQTILSMIKN ATKVHIIDFG IYFGFQWPCL 480 IRRLSKREGG PPLLRITGID VPQPGFRPTE RIEETGHRLA EYARKFAVPF EYQGIASKWE 540 TIRAEDLKVG KDEVVIVNCL YRFRNLIDET VAVDSPRNRV LNTIRQVNPA IFIHGIVNGS 600 YSVPFFITRF REALFHFSAL FDMLEATVPR DDAQRALIER DLFGREALNV IACEGSDRVE 660 RPETYKQWQV RNLRAGFVQA QLSQDIVTKA KAKVKDIYHK DFVIDEDSGW LLQGWKGRII 720 YAMSAWKPNK N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-51 | 340 | 728 | 1 | 380 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794111.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A3L6S7Z0 | 0.0 | A0A3L6S7Z0_PANMI; Scarecrow-like protein 9 | ||||
STRING | Pavir.J32327.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |