PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g04810.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 371aa MW: 38600.8 Da PI: 9.4403

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g04810.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.7e-39	83	143	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+n++ss Zjn_sc00003.1.g04810.1.am.mk 83 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNRRSS 143 67899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-36	67	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	86	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.693	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MVFASVPAYQ DPPNWNNQQG QQPRASGGGD APLLPVDPAA ATATPPEATG LPSSSTAASA 60 SVATQARPNS MAERARLARM PQPEPALKCP RCDSTNTKFC YYNNYSLSQP RHFCKTCRRY 120 WTRGGSLRNV PVGGGCRRNR RSSKSSSSGA SSSSSKPSSS ARQLPSGPSS TPSTPGGITG 180 GIIPPGLGSL SHQYLPFLGS MHQPGGNLGL TFSAGLPPLG MQHVDAVDQF PVASGGASLD 240 QWRVHQQQPQ QQFPFLAGGV LDLQPRPQMY QLGLEANRGS GGSAASAFTL GQASGTTARE 300 GPMKLDLDDS KGQEMSLQRQ YMAALRHGED IWDGNTGGSA GDGRGNDGAG WPMNVPGFRS 360 SSTGGDGSGL L

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MVFASVPAYQ DPPNWNNQQG QQPRASGGGD APLLPVDPAA ATATPPEATG LPSSSTAASA  60
SVATQARPNS MAERARLARM PQPEPALKCP RCDSTNTKFC YYNNYSLSQP RHFCKTCRRY  120
WTRGGSLRNV PVGGGCRRNR RSSKSSSSGA SSSSSKPSSS ARQLPSGPSS TPSTPGGITG  180
GIIPPGLGSL SHQYLPFLGS MHQPGGNLGL TFSAGLPPLG MQHVDAVDQF PVASGGASLD  240
QWRVHQQQPQ QQFPFLAGGV LDLQPRPQMY QLGLEANRGS GGSAASAFTL GQASGTTARE  300
GPMKLDLDDS KGQEMSLQRQ YMAALRHGED IWDGNTGGSA GDGRGNDGAG WPMNVPGFRS  360
SSTGGDGSGL L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	140	RNVPVGGGCRRNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791451.1	1e-150	dof zinc finger protein DOF5.1-like isoform X2
TrEMBL	A0A2S3IRW0	1e-149	A0A2S3IRW0_9POAL; Uncharacterized protein
STRING	Pavir.J14669.1.p	1e-144	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	1e-41	OBF-binding protein 3