PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g04010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 575aa    MW: 62162.4 Da    PI: 9.4821
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g04010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-39541531100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrr+Ca++Cvlapyfp ++p+kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + 
  Zjn_sc00003.1.g04010.1.am.mk  54 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNMIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVC 134
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                   +lq+q ++lk++la++++ 
  Zjn_sc00003.1.g04010.1.am.mk 135 RLQKQANELKVQLARAQAD 153
                                   **************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.29353154IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-4054151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MEYSNASTGM TAAEHYYRSM SPPSWESSSG SPSPSPPSAV QLVGNVAPTV VMSPCAACKI  60
LRRRCADGCV LAPYFPPTEP AKFTTAHRVF GASNMIKLLQ DLPESSRADA VSSMVYEAEA  120
RLRDPVYGCA GAVCRLQKQA NELKVQLARA QADLLNVQAQ HANLLALVCV EVANRRDSPQ  180
QEQQTTSTPL VMDDGGSCSD LGGAGYQMFY DSDLLDSATW PDHEAQLWTY EQHLKSTPRP  240
WSTCACCFVW NMRRHTGQRE QTTHRARRRA TPKPNLPIPN SLGRAVTGSL LGAVVRLNLA  300
NGFHISHANH AVTSCDKTPA RLAPGRRIPM HGRSSSSPSG KQPASNQRRN PSPLVVCDCL  360
RRLSFDHGFR EIACRSASDS RGVAGRVLES RRMDPKHPWI HSRNVQGERA AGVHTRRAAP  420
DFLEAWKAGT VTVYGRGRKS CIYAQLANPL SVLSRLVAAA SPPAGWACGL REKRTPTPRX  480
APPALLLAPP IACRWRGRGS ADFAVYCTRV AVKHRRLSDD CSAFSFINGK SQPLAAVAVA  540
VDAWSGFFTL ADMAATPGKE AEMPGAAECA PNGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-385315510112LOB family transfactor Ramosa2.1
5ly0_B3e-385315510112LOB family transfactor Ramosa2.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0725151e-154AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence.
GenBankCT8321431e-154CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-60LOB domain-containing protein 1