PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g03550.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 420aa    MW: 44742.8 Da    PI: 7.6641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g03550.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-13123177148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                                   +g WT+eEd +l+     +G+g+W+t++++         ++R++k+c++r+ +yl
  Zjn_sc00003.1.g03550.1.am.mk 123 KGLWTPEEDAKLLAFTSTHGTGNWTTVPQRAAdemtsagLKRCGKSCRLRYTNYL 177
                                   678**************************************************97 PP
2Myb_DNA-binding52.98.4e-17185226346
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   ++T+eE+el+v ++++lG++ W++Ia+ ++ gRt++++k++w++
  Zjn_sc00003.1.g03550.1.am.mk 185 NFTQEEEELIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 226
                                   89******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-21114181IPR009057Homeodomain-like
PROSITE profilePS5129412.74118177IPR017930Myb domain
SuperFamilySSF466893.63E-28120224IPR009057Homeodomain-like
SMARTSM007171.3E-11122179IPR001005SANT/Myb domain
PfamPF002497.3E-12123177IPR001005SANT/Myb domain
CDDcd001673.15E-9126177No hitNo description
PROSITE profilePS5129425.003178232IPR017930Myb domain
SMARTSM007173.5E-15182230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-23182232IPR009057Homeodomain-like
PfamPF002495.4E-15185226IPR001005SANT/Myb domain
CDDcd001673.28E-12185228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAVPILEITA FRIPPLGSHP FNVVIVVAVA LLGVARGAVA VLNRGRGGHA FVARLHLPQH  60
VVTVRAFFLL LPLLIVGAAS ICTVTTTTTF PQRCGGLTGQ ARRRGRSPSM GRPPCCDKAS  120
VKKGLWTPEE DAKLLAFTST HGTGNWTTVP QRAADEMTSA GLKRCGKSCR LRYTNYLRPN  180
LKHENFTQEE EELIVTLHAM LGSRWSLIAN QLPGRTDNDV KNYWNTKLSK KLRQRGIDPI  240
THRPIADLMH SIGALAIRPP QPPQHPNTSA YLLPASPAAL PLVHDVAFHA AGLLPPHQQQ  300
QQQVLVDVDA PESSHHGQIK WSDFLADDAT AEAQQVLGQQ YHHEAVAPAG GVQASGSTAA  360
GGGHNACTDY NAGGGGGGDD GAAAFIDAIL DCDKETGVDQ LIAELLADPA YYAGSSSSPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-261232327108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0854911e-141BT085491.1 Zea mays full-length cDNA clone ZM_BFc0020H06 mRNA, complete cds.
GenBankEU9670891e-141EU967089.1 Zea mays clone 299414 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150470.11e-143uncharacterized protein LOC100284100
TrEMBLB6TQ241e-141B6TQ24_MAIZE; DNA binding protein
STRINGGRMZM2G308034_P011e-142(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.14e-60myb domain protein 103