PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00003.1.g02270.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 198aa MW: 22145.7 Da PI: 9.512

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00003.1.g02270.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21	7.1e-07	59	82	4	27
XCHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkae 27 k+ rr+++NReAAr+sR+RKk+ Zjn_sc00003.1.g02270.1.sm.mkhc 59 QKVLRRLAQNREAARKSRLRKKQL 82 5899*****************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.7E-4	56	98	No hit	No description
PROSITE pattern	PS00036	0	63	78	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-21	138	196	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MADANSRTDT SIVLDTDDKD QRDANVRLGS LKLENGHSGA AMASNSSDRS DRSDKPMDQK 60 VLRRLAQNRE AARKSRLRKK QLESSKLKLA SLEQELQKAR QQGIFISSSG DQTHSMSGNG 120 AMTFDLEYAR WQEEQNKQIN ELRAAVNAHA SDSDLRLIVD GIMAHYDEIF RQKGVAAKAD 180 VFHILSGMWK TPAERLTT

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066852	1e-148	BT066852.1 Zea mays full-length cDNA clone ZM_BFb0077I20 mRNA, complete cds.
GenBank	KJ727805	1e-148	KJ727805.1 Zea mays clone pUT5757 bZIP transcription factor (bZIP52) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199874.1	1e-112	transcription factor TGA2.2 isoform X1
Swissprot	Q7X993	1e-104	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A3B6JKH1	1e-111	A0A3B6JKH1_WHEAT; Uncharacterized protein
TrEMBL	A0A446QUW5	1e-111	A0A446QUW5_TRITD; Uncharacterized protein
TrEMBL	A0A446QUZ9	1e-111	A0A446QUZ9_TRITD; Uncharacterized protein
TrEMBL	A0A453I7D4	1e-111	A0A453I7D4_AEGTS; Uncharacterized protein
TrEMBL	W5EIP1	1e-111	W5EIP1_WHEAT; Uncharacterized protein
STRING	Traes_4AS_6EDD5ACF7.2	1e-112	(Triticum aestivum)
STRING	Traes_4DL_73DC40D7B.1	1e-112	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP42268	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-59	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]