PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00003.1.g01860.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 80aa MW: 8890.96 Da PI: 6.8005 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.4 | 4.3e-15 | 47 | 75 | 1 | 29 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtP 29 kprl+WtpeLHerFveav+qLGG++ +t Zjn_sc00003.1.g01860.1.sm.mkhc 47 KPRLKWTPELHERFVEAVNQLGGPDSTTA 75 79***********************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 45 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.52E-5 | 46 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-9 | 47 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-5 | 49 | 69 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MFHHQQQLQS HGHFLSTRQS FPPERHLLLQ GGSVPSETGL VLSTDAKPRL KWTPELHERF 60 VEAVNQLGGP DSTTAPAIPD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467933.1 | 9e-42 | myb-related protein 2 | ||||
Swissprot | Q9SQQ9 | 3e-21 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | C5X1R0 | 2e-40 | C5X1R0_SORBI; Uncharacterized protein | ||||
STRING | Sb01g036680.1 | 4e-41 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27546 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.1 | 1e-23 | G2-like family protein |
Publications ? help Back to Top | |||
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