PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g17540.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 313aa    MW: 34605.1 Da    PI: 8.4825
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g17540.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.2e-18225259135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Zjn_sc00002.1.g17540.1.am.mk 225 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 259
                                   *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-16219269IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-14223283No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13223257IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.385223255IPR000679Zinc finger, GATA-type
CDDcd002021.27E-13224271No hitNo description
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
PfamPF003209.0E-16225259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGHDLTCMEH EFARAPTIPM PRDLRLTSRD SMHLLLSPLK IEYLSRPDIF HMLLLRWLLL  60
LVIGFVLMWE AVDLGMGLVH RHTANTTTMP AAPSPTSMNH YFYGGVGGHT AASSSSFNLS  120
FADDFSIPAV PSEEAAELEW LSNFVDDSYP DMPAGYCYPP EALVAAAQQQ QQNNNKLPPS  180
VTGSRTKRSR STSAQQRSKN KQNQLPAGPG GDDTNNSEEG GVRRCTHCAS EKTPQWRTGP  240
LGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTQHSNSH RKVMELRRQK ELLHLRGTSS  300
SASSTTFRDY GVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658338.12e-65GATA transcription factor 2
SwissprotO497431e-54GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A0A9GYF62e-75A0A0A9GYF6_ARUDO; GATA transcription factor
STRINGGRMZM2G113098_P016e-65(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-53GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]