PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g17080.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 620aa MW: 66857.9 Da PI: 7.6731

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g17080.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.9	1.9e-11	2	45	42	87
trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 g++r++k+C+ek+en+ k+yk++k+g+ +r ++ + +++f++lea Zjn_sc00002.1.g17080.1.sm.mkhc 2 GYNRNAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 45 9*************************97..66667****985 PP
2	trihelix	107.2	1.1e-33	319	403	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rW+k ev+aLi++r+e+e r+++++ k+plWe++s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tc Zjn_sc00002.1.g17080.1.sm.mkhc 319 RWPKAEVHALIQLRTELEARYQDSSPKGPLWEDISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTC 396 8*******************************************************************8.99* PP trihelix 80 pyfdqle 86 py++ql+ Zjn_sc00002.1.g17080.1.sm.mkhc 397 PYYHQLN 403 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.0E-8	2	46	No hit	No description
PROSITE profile	PS50090	7.027	318	376	IPR017877	Myb-like domain
CDD	cd12203	2.91E-32	318	383	No hit	No description
Pfam	PF13837	3.5E-23	319	405	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.0E-4	319	375	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MGYNRNAKKC REKFENVDKY YKRTKDGRAG RGDGKAYRFF SELEALHGAS SPHPPASLAP 60 TPVAMAPPAP FHLSGVRSMA PAMHAEPPQP PPGTTATCTF TAGDVSFSSS SDGEDTEETG 120 DGGKRKRRDG DGGRGSSKMM RFFEGLMRQV MERQEVMQQR FIEAIERREK ERMIREEAWR 180 RQELAHLARE QDALAQERAM AASRDAAVVS FIQRITGQTI PVPTSVPAPQ VTMISALKPT 240 PVATAAPAPP PPPQHYHRQP PSSVQLPAAP KPHTAVPPIS ATQTQQQTPQ TESKDATVVR 300 ALAESQDTVG SGGAPSPSRW PKAEVHALIQ LRTELEARYQ DSSPKGPLWE DISAGMRRLG 360 YNRNAKRCKE KWENINKYFK KVKESNKKRP EDSKTCPYYH QLNALYRSKA LASSGAGGSA 420 PHPRREAVTV LAAVPLSQTA PHHQVVTGGG NKQDCNTGNG NRSGCCASEN GGRSGDMQTP 480 GSNGGVSANT IRLSTEGPGG NGTATKNKED NIVTKETAPA EETPQPVSMN DSYAHDRMDA 540 GDDSDSMDDD EDDSDEDEDE GDVGSGGNNN NKTMQYEIQF QRQHQSQSQS GVVRPNASGG 600 AGSGPGPATA SGSFLTMVHH

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MGYNRNAKKC REKFENVDKY YKRTKDGRAG RGDGKAYRFF SELEALHGAS SPHPPASLAP  60
TPVAMAPPAP FHLSGVRSMA PAMHAEPPQP PPGTTATCTF TAGDVSFSSS SDGEDTEETG  120
DGGKRKRRDG DGGRGSSKMM RFFEGLMRQV MERQEVMQQR FIEAIERREK ERMIREEAWR  180
RQELAHLARE QDALAQERAM AASRDAAVVS FIQRITGQTI PVPTSVPAPQ VTMISALKPT  240
PVATAAPAPP PPPQHYHRQP PSSVQLPAAP KPHTAVPPIS ATQTQQQTPQ TESKDATVVR  300
ALAESQDTVG SGGAPSPSRW PKAEVHALIQ LRTELEARYQ DSSPKGPLWE DISAGMRRLG  360
YNRNAKRCKE KWENINKYFK KVKESNKKRP EDSKTCPYYH QLNALYRSKA LASSGAGGSA  420
PHPRREAVTV LAAVPLSQTA PHHQVVTGGG NKQDCNTGNG NRSGCCASEN GGRSGDMQTP  480
GSNGGVSANT IRLSTEGPGG NGTATKNKED NIVTKETAPA EETPQPVSMN DSYAHDRMDA  540
GDDSDSMDDD EDDSDEDEDE GDVGSGGNNN NKTMQYEIQF QRQHQSQSQS GVVRPNASGG  600
AGSGPGPATA SGSFLTMVHH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC121490	1e-105	AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBank	AC134237	1e-105	AC134237.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0090O10, complete sequence.
GenBank	AK241800	1e-105	AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
GenBank	AP014959	1e-105	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791925.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A0A2T7CIN4	0.0	A0A2T7CIN4_9POAL; Uncharacterized protein
STRING	Si034382m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	7e-49	Trihelix family protein