PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g17070.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 103aa MW: 10971.1 Da PI: 5.1038

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g17070.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.8	6.7e-14	65	102	1	38
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm 38 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+++ Zjn_sc00002.1.g17070.1.sm.mk 65 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRYV 102 8**********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MQQQQPGMPP FSPTAGAGTT TAQPSPISSR PPEGHPEPGA GGSAPRAEDS FDHEGDRSGS 60 SVGSRWPRQE TLALLKIRSE MDAAFREAAL KGPLWEEVSR YVV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269\|PubMed:19717615, ECO:0000269\|PubMed:21169508}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by water stress. {ECO:0000269\|PubMed:21169508}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC121490	3e-37	AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBank	AC134237	3e-37	AC134237.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0090O10, complete sequence.
GenBank	AC210446	3e-37	AC210446.1 Oryza glaberrima clone OG_BBa0010J07, complete sequence.
GenBank	AC216760	3e-37	AC216760.1 Oryza minuta clone OM__Ba0212D22, complete sequence.
GenBank	AC232902	3e-37	AC232902.1 Oryza officinalis clone OO__Ba0128B10, complete sequence.
GenBank	AP014959	3e-37	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	3e-37	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004986013.1	1e-26	trihelix transcription factor GTL1 isoform X2
Refseq	XP_015689742.1	7e-29	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q9C882	1e-14	GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBL	J3LJ74	2e-26	J3LJ74_ORYBR; Uncharacterized protein
STRING	OB03G11000.1	4e-27	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15223	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-16	Trihelix family protein

Publications ? help Back to Top
Caro E,Desvoyes B,Gutierrez C GTL1 keeps cell growth and nuclear ploidy under control. EMBO J., 2012. 31(24): p. 4483-5 [PMID:23188085] Zheng X, et al. The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development. Sci Rep, 2016. 6: p. 27042 [PMID:27245096] Shibata M, et al. GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis. Development, 2018. [PMID:29439132]