PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g16290.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 899aa MW: 96681.2 Da PI: 8.8379

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g16290.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1e-08	646	683	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Zjn_sc00002.1.g16290.1.am.mk 646 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 683 664459******************************88 PP
2	BELL	69.7	5.1e-23	524	578	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 Vd+rY+ y+eq++ +++ Feavag +a+ Yt+lA+++iSrhFr+L+d i+ q+ Zjn_sc00002.1.g16290.1.am.mk 524 HVDRRYRSYCEQMRSLAGGFEAVAGERAAAAYTALASRTISRHFRNLRDGIVAQL 578 79**************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-23	383	576	IPR006563	POX domain
Pfam	PF07526	7.0E-39	389	574	IPR006563	POX domain
PROSITE profile	PS50071	12.05	624	687	IPR001356	Homeobox domain
SMART	SM00389	6.6E-9	627	691	IPR001356	Homeobox domain
CDD	cd00086	7.03E-12	627	688	No hit	No description
SuperFamily	SSF46689	3.64E-17	628	694	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-27	630	693	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-17	644	683	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MDGDALSVRS NKHARVRVFI SPASTHACTS SVPTTHCSTD AKAGRVVVVD SSSSEDLLLL 60 LYRSTTSLVV TDNKRAGKCK RTSEVCELGR SRRSAHSGDD LRAGAAFNQI RADISAETAA 120 SASVKRATPS RLPVAVSGPA SIDRSNDLLA ARGAAQDRRG RRDRQDNEFG GVVVVVVVVS 180 DPSLLGAREP LATRPPLPLR RRRRRSVRYE AVLGTREYDR PKIPDEVVVA AAAGRGESLT 240 RQPPPRSIHR EQRLPSVPCF ADYFSAATAD ATAGMPAMEE GAPELFGYHA DMELLGMRGL 300 AAAMPRGDSK AAVLIDAGSG GDHGQQQHHQ LPTQAPLSLS LCRPDGGAVQ GLTLHQHLAG 360 SSRLQHQQQP AAWSTHDHSA GLVGASWHLR SSRFLLPTQQ LLQEFCSLPG AADITNKRAK 420 AATTTTKPSQ EQQNEADGGD GSSSSASWAP SPQIQAMDAV ELQRLKDKLY IMLEEVSDDR 480 SVMAARPPIH AISSLHEAGR PSRLTQRKFC CAVPAQLHQA ELMHVDRRYR SYCEQMRSLA 540 GGFEAVAGER AAAAYTALAS RTISRHFRNL RDGIVAQLQA VRKALGEKGV AVPGMTRGET 600 PRLRVLDQCI RQQKTLSQAG MMESHPWRPQ RGLPERAVTI LRAWLFEHFL HPYPSDVDKH 660 ILARQTGLSR SQVSNWFINA RVRLWKPMVE EMYVEEMKGE QLHDGSGEGH VNPNPTSSQG 720 AASAEAYNGG RHGGVGEADA GGASNNGVDR KPTRDQLMHD AGSLASVVNV GSSRGARLEN 780 FGLMDHHLHF DAPYDGGHHQ AASFGGVSLT LGLQQHADSR VDSGVNIAFG APPPSAHHGG 840 AATGYLFATG HQQQQQQTEV GHHVQFGGGA GMDGDAVAHG QEHYRSLSAG FHLLRDLAG

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MDGDALSVRS NKHARVRVFI SPASTHACTS SVPTTHCSTD AKAGRVVVVD SSSSEDLLLL  60
LYRSTTSLVV TDNKRAGKCK RTSEVCELGR SRRSAHSGDD LRAGAAFNQI RADISAETAA  120
SASVKRATPS RLPVAVSGPA SIDRSNDLLA ARGAAQDRRG RRDRQDNEFG GVVVVVVVVS  180
DPSLLGAREP LATRPPLPLR RRRRRSVRYE AVLGTREYDR PKIPDEVVVA AAAGRGESLT  240
RQPPPRSIHR EQRLPSVPCF ADYFSAATAD ATAGMPAMEE GAPELFGYHA DMELLGMRGL  300
AAAMPRGDSK AAVLIDAGSG GDHGQQQHHQ LPTQAPLSLS LCRPDGGAVQ GLTLHQHLAG  360
SSRLQHQQQP AAWSTHDHSA GLVGASWHLR SSRFLLPTQQ LLQEFCSLPG AADITNKRAK  420
AATTTTKPSQ EQQNEADGGD GSSSSASWAP SPQIQAMDAV ELQRLKDKLY IMLEEVSDDR  480
SVMAARPPIH AISSLHEAGR PSRLTQRKFC CAVPAQLHQA ELMHVDRRYR SYCEQMRSLA  540
GGFEAVAGER AAAAYTALAS RTISRHFRNL RDGIVAQLQA VRKALGEKGV AVPGMTRGET  600
PRLRVLDQCI RQQKTLSQAG MMESHPWRPQ RGLPERAVTI LRAWLFEHFL HPYPSDVDKH  660
ILARQTGLSR SQVSNWFINA RVRLWKPMVE EMYVEEMKGE QLHDGSGEGH VNPNPTSSQG  720
AASAEAYNGG RHGGVGEADA GGASNNGVDR KPTRDQLMHD AGSLASVVNV GSSRGARLEN  780
FGLMDHHLHF DAPYDGGHHQ AASFGGVSLT LGLQQHADSR VDSGVNIAFG APPPSAHHGG  840
AATGYLFATG HQQQQQQTEV GHHVQFGGGA GMDGDAVAHG QEHYRSLSAG FHLLRDLAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	1e-16	633	691	5	63	Homeobox protein Meis2
4xrm_B	1e-16	633	691	5	63	Homeobox protein Meis2
4xrs_A	1e-16	633	690	1	58	Homeobox protein Meis1
4xrs_B	1e-16	633	690	1	58	Homeobox protein Meis1
5bng_A	1e-16	633	691	1	59	Homeobox protein Meis2
5bng_B	1e-16	633	691	1	59	Homeobox protein Meis2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	207	RRRRRRSVR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU957962	1e-179	EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds.
GenBank	EU957980	1e-179	EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985907.1	0.0	homeobox protein BEL1 homolog
Refseq	XP_012698473.1	0.0	homeobox protein BEL1 homolog
Refseq	XP_012698474.1	0.0	homeobox protein BEL1 homolog
TrEMBL	A0A1E5UVC1	0.0	A0A1E5UVC1_9POAL; Homeobox protein BEL1-like protein
STRING	Pavir.Ib00072.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3814	37	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	8e-74	TALE family protein