PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g15600.1.es.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 311aa MW: 34644.2 Da PI: 8.1655

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g15600.1.es.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.2	8.9e-25	1	43	10	52
RWP-RK 10 lskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 l+k+F++++k+AAk Lgvc+T+LKriCRq+GI+RWP+Rki+++ Zjn_sc00002.1.g15600.1.es.mkhc 1 LRKHFAGSLKEAAKRLGVCPTTLKRICRQHGINRWPSRKIRKV 43 789**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	1.6E-23	1	43	IPR003035	RWP-RK domain
PROSITE profile	PS51519	15.812	1	63	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.3E-24	210	294	No hit	No description
SuperFamily	SSF54277	3.19E-22	211	294	No hit	No description
SMART	SM00666	3.7E-22	213	296	IPR000270	PB1 domain
PROSITE profile	PS51745	20.817	213	296	IPR000270	PB1 domain
Pfam	PF00564	2.3E-16	214	295	IPR000270	PB1 domain
CDD	cd06407	1.49E-41	214	294	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
LRKHFAGSLK EAAKRLGVCP TTLKRICRQH GINRWPSRKI RKVGHSLKKL QMVIDSVHGA 60 EGTVQLSSLY ENFTKTSWSD RELQGDATYP LSEQNHHSEP SVLDQQCEGR FTSQTSGSNS 120 LSPCGSQSST SSHGCSSGSK SQQHISAPHL AIMQEVCMEE NQSSTLLRAS SHAEPHMLTE 180 ETPVTLFRSQ SPMLLSEKST EKVPGSQRSK PDSLKIKAMY GEERCIFRLQ PSWGFDKLKE 240 EIVRRFSIAK ETYVDLKYLD DESEWVLLTC DADLLECIDV YKSSSAQTVK ILVNRTVQTV 300 LAPSIGLTGL T

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797092.1	1e-164	protein NLP1-like
Swissprot	Q10S83	1e-147	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A3L6TQF2	1e-170	A0A3L6TQF2_PANMI; Protein NLP1-like isoform X2
STRING	Pavir.J25840.1.p	1e-164	(Panicum virgatum)
STRING	Si034133m	1e-162	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	2e-72	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]