PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g15450.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 324aa MW: 36548.5 Da PI: 7.3214

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g15450.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.1	1.5e-48	13	139	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 pGfrFhPt+eel+++yL+ v+gkkl++ ++i +++iy++ePwdLp ++k++e+ewyfF++rd+++ +g r+nr+t++g Zjn_sc00002.1.g15450.1.sm.mkhc 13 PGFRFHPTEEELLDFYLHCVVHGKKLNF-DIIGTLNIYRHEPWDLPGMAKTGEREWYFFVPRDRRAGSGGRPNRTTEHG 90 9***********************99.99***********999999*********************** PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg+d+++ s+ ++++glkktLvfykgrap+g+ktdWvm+eyrl Zjn_sc00002.1.g15450.1.sm.mkhc 91 FWKATGSDRAIRSSadAKRVIGLKKTLVFYKGRAPRGTKTDWVMNEYRL 139 ********99777888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-56	3	166	IPR003441	NAC domain
PROSITE profile	PS51005	53.715	11	166	IPR003441	NAC domain
Pfam	PF02365	1.9E-24	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAMASMEMEQ DLPGFRFHPT EEELLDFYLH CVVHGKKLNF DIIGTLNIYR HEPWDLPGMA 60 KTGEREWYFF VPRDRRAGSG GRPNRTTEHG FWKATGSDRA IRSSADAKRV IGLKKTLVFY 120 KGRAPRGTKT DWVMNEYRLP EFGFATGRAA PAPPKEDMVL CKIYRKATPL KELEQRASDM 180 EERQRRSNLD YVPRAPLVRV TPSAGDDYLS PDDGHDSFLI PSSSSSPPSE YSYSYNAPIM 240 EAKKEADATV TLAAMSLPPL QPITATPAAV NVPSTQHPTA RHGDLPSLQV PANHVVFDWL 300 QDPFLLRSPW QDQLFLSPLA NLLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	13	168	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	13	168	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	13	168	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	13	168	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	13	168	22	170	NAC domain-containing protein 19
3swm_B	2e-45	13	168	22	170	NAC domain-containing protein 19
3swm_C	2e-45	13	168	22	170	NAC domain-containing protein 19
3swm_D	2e-45	13	168	22	170	NAC domain-containing protein 19
3swp_A	2e-45	13	168	22	170	NAC domain-containing protein 19
3swp_B	2e-45	13	168	22	170	NAC domain-containing protein 19
3swp_C	2e-45	13	168	22	170	NAC domain-containing protein 19
3swp_D	2e-45	13	168	22	170	NAC domain-containing protein 19
4dul_A	2e-45	13	168	19	167	NAC domain-containing protein 19
4dul_B	2e-45	13	168	19	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107090	1e-156	AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795753.1	1e-166	NAC domain-containing protein 22
Swissprot	Q10S65	1e-135	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A3L6S6V0	1e-167	A0A3L6S6V0_PANMI; NAC domain-containing protein 67-like
STRING	Pavir.J24394.1.p	1e-159	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	6e-84	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]