PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g15320.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 378aa MW: 40864.4 Da PI: 4.5597

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g15320.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.8	0.00011	216	236	7	27
HHHHHHHHHHHHHHHHHHCTS CS HLH 7 erErrRRdriNsafeeLrell 27 ++ErrRR+r+N++++ Lr+++ Zjn_sc00002.1.g15320.1.am.mkhc 216 MAERRRRKRLNDRLSMLRSIM 236 79****************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.362	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-11	214	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-6	215	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-7	216	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
PTAVFGPQVA SVPVPLAVIP PVSPTRCHWP LQLGHVRSEL IMELDEETFL DELVSLRREA 60 AAAAPWQAYP GAGSGGVMMS DLLFYGGEGA GTSSGMDLSP FQELPPMAPV PVPPPLPPHP 120 HEEFNFDCLS EVCNPYRSSV AVPGEAVAVG QSLAPLQDAA LMVEETCGDM GQQYGGGASP 180 TFVFGGQSSE MANIRAYSGS AHHRSKMHGA PSKNLMAERR RRKRLNDRLS MLRSIMDRIS 240 ILGDTIDYVK ELTERIKVLE DEMGSSLEDL DLLNTLNDSS DNNNDMIVRN STKFDVEKRS 300 NGSTRIEICC PANPGVLLST VSALEVLGLE MEQCVVSCFS DFGMQASCLQ EDGKRQVIST 360 DEIKQALFRS AGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

PTAVFGPQVA SVPVPLAVIP PVSPTRCHWP LQLGHVRSEL IMELDEETFL DELVSLRREA  60
AAAAPWQAYP GAGSGGVMMS DLLFYGGEGA GTSSGMDLSP FQELPPMAPV PVPPPLPPHP  120
HEEFNFDCLS EVCNPYRSSV AVPGEAVAVG QSLAPLQDAA LMVEETCGDM GQQYGGGASP  180
TFVFGGQSSE MANIRAYSGS AHHRSKMHGA PSKNLMAERR RRKRLNDRLS MLRSIMDRIS  240
ILGDTIDYVK ELTERIKVLE DEMGSSLEDL DLLNTLNDSS DNNNDMIVRN STKFDVEKRS  300
NGSTRIEICC PANPGVLLST VSALEVLGLE MEQCVVSCFS DFGMQASCLQ EDGKRQVIST  360
DEIKQALFRS AGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	224	ERRRRKRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985797.1	1e-173	transcription factor bHLH61
TrEMBL	K4AC63	1e-172	K4AC63_SETIT; Uncharacterized protein
STRING	Si036470m	1e-173	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1302	37	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-55	beta HLH protein 93