PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00002.1.g14270.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 281aa MW: 30168.3 Da PI: 6.7787 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.1 | 4.1e-40 | 51 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp+ +r++a+ ++ yeA+ar+rdP+yG+v+ Zjn_sc00002.1.g14270.1.am.mkhc 51 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPHADRPEAAVTISYEAQARLRDPIYGCVA 129 7*************************89*************************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +i++lqqq+++l+a+la+lk++ Zjn_sc00002.1.g14270.1.am.mkhc 130 HIFALQQQVMTLQAQLASLKAQ 151 *****************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.744 | 50 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-38 | 51 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MQGVAPPSSS PRRSTEPRAE THRASRGKKR AEKPITVPSE ERSEMTGFGS PCGACKFLRR 60 KCVRGCVFAP YFCHEQGAAH FAAIHKVFGA SNVSKLLAHL PHADRPEAAV TISYEAQARL 120 RDPIYGCVAH IFALQQQVMT LQAQLASLKA QAAQGHGGHE DAKGYMGSAA EQLGYGCSWY 180 NNSNGGGGPV DSPATQPCAY SNGGHESITA LLQSDYMQQS LYHALEQAGS ADDDGRQAMD 240 YEAPAESSSF GADESGWRSS SGYQDCEDLQ SVAYAYLNHR S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-34 | 47 | 145 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-34 | 47 | 145 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF051732 | 1e-151 | EF051732.1 Zea mays rootless concerning crown and seminal lateral roots (rtcs) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797613.1 | 1e-142 | LOB domain-containing protein CRL1-like | ||||
Swissprot | Q5UG13 | 1e-109 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A2S3IU95 | 1e-140 | A0A2S3IU95_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CHM3 | 1e-140 | A0A2T7CHM3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00283.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42440.1 | 7e-56 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|