PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g13250.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 434aa MW: 46093.6 Da PI: 7.7647

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g13250.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.9e-40	100	160	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Zjn_sc00002.1.g13250.1.am.mkhc 100 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 160 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-27	97	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MAECRAGGGG GGGDGLIKLF GKTIPVPEAA TAVGDADRDL QQSGSNTTEP KGHETTLPDS 60 TGSPSQQGVT DTEESSAENN SLADQQQGDP TKQKENLKKP DKILPCPRCN SMDTKFCYYN 120 NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSAS AASHFLQRVR AALPVDPLCI 180 SAKINGTVLS FGSDTSSLDL TEQKKHLKEK LVPVTRIKNV DDQSIGSCAG EGSPKGGEPK 240 LINQKEQVVT ADKSASVVQH PCMNGVTMWP FSCAPPPACY TSGIPILFYP AAAAYWGCMV 300 PGAWNSPWLS HFQSEYATSP SSASPASIKS NCFTSGKRPR DGDEEGNAPG NGKVWVPKTI 360 RIDDADEVAR SSILSLIGIN GDKVGKDGKG CKLSSIFEPK DEAETATHAI INGLPFLQGN 420 PAALSRSLTF QEGS

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MAECRAGGGG GGGDGLIKLF GKTIPVPEAA TAVGDADRDL QQSGSNTTEP KGHETTLPDS  60
TGSPSQQGVT DTEESSAENN SLADQQQGDP TKQKENLKKP DKILPCPRCN SMDTKFCYYN  120
NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSAS AASHFLQRVR AALPVDPLCI  180
SAKINGTVLS FGSDTSSLDL TEQKKHLKEK LVPVTRIKNV DDQSIGSCAG EGSPKGGEPK  240
LINQKEQVVT ADKSASVVQH PCMNGVTMWP FSCAPPPACY TSGIPILFYP AAAAYWGCMV  300
PGAWNSPWLS HFQSEYATSP SSASPASIKS NCFTSGKRPR DGDEEGNAPG NGKVWVPKTI  360
RIDDADEVAR SSILSLIGIN GDKVGKDGKG CKLSSIFEPK DEAETATHAI INGLPFLQGN  420
PAALSRSLTF QEGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985552.1	0.0	cyclic dof factor 1
TrEMBL	C7EAG3	0.0	C7EAG3_ELECO; Dof-type zinc finger protein
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-49	cycling DOF factor 3