PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g13170.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 462aa    MW: 50190.4 Da    PI: 6.6221
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g13170.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-17167220356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Zjn_sc00002.1.g13170.1.am.mk 167 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 220
                                   4568999**********************************************9 PP
2HD-ZIP_I/II123.78.7e-40166256191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L 
  Zjn_sc00002.1.g13170.1.am.mk 166 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALV 246
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                    ++++L++e 
  Zjn_sc00002.1.g13170.1.am.mk 247 LHNKKLQAEC 256
                                   ******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.17E-19158224IPR009057Homeodomain-like
PROSITE profilePS5007117.346162222IPR001356Homeobox domain
SMARTSM003891.3E-17165226IPR001356Homeobox domain
PfamPF000465.2E-15167220IPR001356Homeobox domain
CDDcd000863.65E-17167223No hitNo description
Gene3DG3DSA:1.10.10.604.3E-18169230IPR009057Homeodomain-like
PRINTSPR000312.8E-5193202IPR000047Helix-turn-helix motif
PROSITE patternPS000270197220IPR017970Homeobox, conserved site
PRINTSPR000312.8E-5202218IPR000047Helix-turn-helix motif
PfamPF021831.2E-10222256IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGGAGGPPDS SGEGAEPCTL HVSLCVGLSL LAATPIRPMH PAPDGAVGYS FLMPMASNGM  60
ASSPPSFFPP NFLLQMQQTP LDHDPQEHHH SHLPPPPLHH PHHNPFLPSS QCPSLQDFQG  120
MAPMLGKRPM YGADVGTGDD LNGCGGGGGD DASKDELSDD GSQAGEKKRR LNVEQVRTLE  180
KNFELGNKLE PERKLQLARA LGLQPRQVAI WFQNRRARWK TKQLEKDYDA LKRQLDAVKA  240
DNDALVLHNK KLQAECSQQK GCWKRRRWEL AFHLRAYVVL TAFAESCCSK ARAASEWPAN  300
APPGLCSILP LSLDATLTQS IYSSWLLRIV LALKGGREAG SELINLNKET EASCSNRSEN  360
SSEINLDISR TPPSEGPVDP PAHQHQHAGN GAGGMILFYP SVGRSAGVDF DQLLHSSSGP  420
KMEQHGSGDG VQAPEQTSFG NLLCGVDEPP PFWPWADHQH FH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214222RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693751e-153AC169375.4 Sorghum bicolor clone SB_BBc0020O07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465782.11e-109homeobox-leucine zipper protein HOX21
SwissprotA2XD085e-78HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
TrEMBLA3AEK51e-127A3AEK5_ORYSJ; Uncharacterized protein
STRINGTRIUR3_12807-P11e-126(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-56HD-ZIP family protein