PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g12380.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 228aa MW: 25630.6 Da PI: 10.2026

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g12380.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.6	6.4e-15	123	206	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k++++s+v + +l lp +f+++++ k ++ +tl de+ ++++ ++ ++++ l++GW +F+ ++g+++gD v Zjn_sc00002.1.g12380.1.sm.mk 123 FVKAMLHSHVVRGFWLGLPSHFCDNCMPK--KDSIVTLVDENDQEFDTNY--LAYKKG--LSGGWAGFALSHGIRDGDATV 197 89*******************999755..4458***********..555555..9**************** PP EEE-SSSEE CS B3 82 Fkldgrsef 90 F+l++ ++f Zjn_sc00002.1.g12380.1.sm.mk 198 FQLIKPTTF 206 9976555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.1E-16	114	207	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.3E-20	116	207	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.22E-22	121	207	No hit	No description
PROSITE profile	PS50863	10.687	123	220	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-14	123	220	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.8E-13	123	206	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MAAVAKQGIS AYEAAREKTV QENKRKIEAL NLHHLSAAIN MAPKTPSPMK QKRRRIIEAA 60 VVTPSPARRS RRLANLPEVK TPRKPTDSIY LARYGSISMK ARLEATRKAE ELESQLDPEI 120 PSFVKAMLHS HVVRGFWLGL PSHFCDNCMP KKDSIVTLVD ENDQEFDTNY LAYKKGLSGG 180 WAGFALSHGI RDGDATVFQL IKPTTFKSEQ LLMMTMRQPS DSTMQQLY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	55	KRRRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797698.1	1e-128	B3 domain-containing protein Os03g0184500-like
Swissprot	Q10QS9	1e-119	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A2T7CGW7	1e-127	A0A2T7CGW7_9POAL; Uncharacterized protein
STRING	Si037266m	1e-124	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-46	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]