PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g11450.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 237aa MW: 26396.6 Da PI: 5.8521

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g11450.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA+ lgL+ +qV vWFqNrRa++k Zjn_sc00002.1.g11450.1.sm.mkhc 61 KKRRLSDEQARFLEMSFRKERKLETPRKVQLAADLGLDAKQVAVWFQNRRARHK 114 56689***********************************************99 PP
2	HD-ZIP_I/II	112	3.9e-36	61	152	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 kkrrls+eq+++LE+sF++e+kLe+ rKv+la +Lgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++L Zjn_sc00002.1.g11450.1.sm.mkhc 61 KKRRLSDEQARFLEMSFRKERKLETPRKVQLAADLGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRAAHDAVVLRNCHL 139 9**************************************************************************** PP HD-ZIP_I/II 81 ekeveeLreelke 93 ++e+ +L+++l+e Zjn_sc00002.1.g11450.1.sm.mkhc 140 QTEMLKLEDRLAE 152 ******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.617	56	116	IPR001356	Homeobox domain
SMART	SM00389	9.6E-16	59	120	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.68E-16	60	122	IPR009057	Homeodomain-like
CDD	cd00086	9.42E-15	61	116	No hit	No description
Pfam	PF00046	4.4E-16	61	114	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-16	61	114	IPR009057	Homeodomain-like
PRINTS	PR00031	9.7E-6	87	96	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	91	114	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.7E-6	96	112	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MGCEGEERML FPSSFAFVPA ESFAEAADTS GSSGEQKKAR QRRRRKPKPA PEDQAGDEQA 60 KKRRLSDEQA RFLEMSFRKE RKLETPRKVQ LAADLGLDAK QVAVWFQNRR ARHKSKLMEE 120 EFAKLRAAHD AVVLRNCHLQ TEMLKLEDRL AEAEEEKKQL IIAAAAAAAA TGAADTSSPS 180 SSSFSTVTCN PAALVGQQFG VEDEVADFSY MSQYAYNDYL MDFAAGYFGG VVYDQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	63	RRKPKPAPEDQAGDEQAKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985327.1	4e-99	homeobox-leucine zipper protein HOX12
Swissprot	A2XDK5	9e-83	HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
TrEMBL	K4AEE8	9e-98	K4AEE8_SETIT; Uncharacterized protein
STRING	Si037255m	2e-98	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66700.1	8e-34	homeobox 53