PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g10250.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 199aa    MW: 22173.6 Da    PI: 8.7212
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g10250.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY54.45.3e-17156154
                         YABBY  1 advfssseqvCyvqCnfCntila..vsvPstslfkvvtvrCGhCtsllsvnlakas 54
                                  +d++  se++Cyv+C+fCnt+la  v vP + l+ +vtv+CGhC +l  ++l+  +
  Zjn_sc00002.1.g10250.1.am.mk  1 MDLVAPSEHLCYVRCTFCNTVLAlqVGVPCKRLMDTVTVKCGHCNNLSYLSLRPPT 56
                                  578899***************9744778******************9877776655 PP
2YABBY91.52.1e-2887147102162
                         YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                                   s  + e ++rvp v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  Zjn_sc00002.1.g10250.1.am.mk  87 SPTSAEVSARVPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 147
                                   5556778889999***********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-446148IPR006780YABBY protein
SuperFamilySSF470951.31E-891149IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-5102149IPR009071High mobility group box domain
CDDcd013901.79E-5109150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDLVAPSEHL CYVRCTFCNT VLALQVGVPC KRLMDTVTVK CGHCNNLSYL SLRPPTVQPP  60
SPTDDPLGPF QGHCNDCRRN QPLPLGSPTS AEVSARVPFV VKPPEKKHRL PSAYNRFMRE  120
EIQRIKAAKP DIPHREAFSM AAKNWAKCDP RCSTAVSTAT STSAPEPRVV SAPQMLLQER  180
AKEQVVESFD IFKQMERSI
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4702681e-149AB470268.1 Sorghum bicolor SbDL mRNA for DL related protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307124.11e-123protein DROOPING LEAF isoform X1
SwissprotQ76EJ01e-112YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A3L6TQ501e-125A0A3L6TQ50_PANMI; Protein DROOPING LEAF isoform X1
STRINGPavir.Ia04690.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-49YABBY family protein