PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g08970.1.cf.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 372aa    MW: 41034.5 Da    PI: 10.3872
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g08970.1.cf.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind323.7e-101115187
                       GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki............rernlalsekkaavaerd........ 57 
                                     mdddg    rn+g+y+     k nlglqlms +a +rd+k             ++  l+  ++++++++ +        
  Zjn_sc00002.1.g08970.1.cf.mkhc   1 MDDDGGLGiRNWGFYDIV---KGNLGLQLMSPVApDRDTKSllpnstflqnhgHHDALNQLHPQHSHHPGEygggrasg 76 
                                     999999999******987...9*********9999******8888888777554444545555555555559******* PP

                       GAGA_bind  58 ..........maflqrdkalae.rnkalverdnkllalllv 87 
                                               m+f++++++l+  r+++++  ++k+++  + 
  Zjn_sc00002.1.g08970.1.cf.mkhc  77 dmptepqsihMDFAHNEAWLHAsRHQHVH--EQKIIHARPF 115
                                     *********************93444444..5555555544 PP
2GAGA_bind277.65.8e-8516037295301
                       GAGA_bind  95 lpvgvqvlsgtksidslqq.lse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166
                                     +p+++++ s+ +++ +++q + +      pql+++ +   +e+   ++ ++e ++ +++++ +kkrqr+++pk++kakk
  Zjn_sc00002.1.g08970.1.cf.mkhc 160 HPTSYKMRSDERHTLQMRQtQAQaqpqtqPQLQPPEASPCKED-GASPALVEDHSMVRNEPPVKKRQRSQQPKSPKAKK 237
                                     4555555444443333333133344443377777666644444.455566666778888888899************** PP

                       GAGA_bind 167 kkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLP 245
                                     +kk   +++ + ++++  +r++ +kks+++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCtttiS+yPLP
  Zjn_sc00002.1.g08970.1.cf.mkhc 238 PKK-AIVPRGDGAPNRPAPRARGPKKSVGMVINGMDLDLSGIPTPVCSCTGAPQQCYRWGAGGWQSACCTTTISTYPLP 315
                                     ***.77888888888877************************************************************* PP

                       GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaaeGydl.snpvDLkdhWAkHGtnkfvtir 301
                                     ++tkrrg RiagrKm qgafkk+LekL++eGy+l +np+DLk++WAkHGtnkfvtir
  Zjn_sc00002.1.g08970.1.cf.mkhc 316 MNTKRRGVRIAGRKMTQGAFKKVLEKLTGEGYNLiNNPIDLKTFWAKHGTNKFVTIR 372
                                     *********************************8689*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.9E-1061372IPR010409GAGA-binding transcriptional activator
SMARTSM012266.5E-1561372IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDDDGGLGIR NWGFYDIVKG NLGLQLMSPV APDRDTKSLL PNSTFLQNHG HHDALNQLHP  60
QHSHHPGEYG GGRASGDMPT EPQSIHMDFA HNEAWLHASR HQHVHEQKII HARPFGPEQK  120
IVHAHPFGPE QKVIHAHPFG PAGHVGHPGH GGHPGHVRQH PTSYKMRSDE RHTLQMRQTQ  180
AQAQPQTQPQ LQPPEASPCK EDGASPALVE DHSMVRNEPP VKKRQRSQQP KSPKAKKPKK  240
AIVPRGDGAP NRPAPRARGP KKSVGMVING MDLDLSGIPT PVCSCTGAPQ QCYRWGAGGW  300
QSACCTTTIS TYPLPMNTKR RGVRIAGRKM TQGAFKKVLE KLTGEGYNLI NNPIDLKTFW  360
AKHGTNKFVT IR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-156protein Barley B recombinant
RefseqXP_021309578.11e-156protein Barley B recombinant
SwissprotQ8GUC31e-131BBR_HORVU; Protein Barley B recombinant
TrEMBLC5X4B51e-155C5X4B5_SORBI; Uncharacterized protein
STRINGSb02g009750.11e-156(Sorghum bicolor)
STRINGSb02g009782.11e-156(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-59basic pentacysteine1