PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g08830.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 421aa MW: 44673.4 Da PI: 8.767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g08830.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	298	320	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Zjn_sc00002.1.g08830.1.am.mk 298 FTCNYCQRKFFSSQALGGHQNAH 320 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.3E-6	296	325	No hit	No description
PROSITE profile	PS50157	11.323	298	325	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	300	320	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MPGASTQATT PPSHRTEIHP SMDQAKSQSS GGNLQAGMLC RSEAKESQAA MHPNCFLRPQ 60 PPQSTRTRQG VATHRGMTKD PNAQRKGEAR TTLTKTSWRF TRSSPLAART PSRPPLSLSP 120 TDGWVANGDG GGFGFDAVKR RAEFCSLSLS LSLSAVCVVP EARGAFLPAA LNSWLCGTFV 180 DVVVALSFVK CLPSMTSSFM PGLLGLRVRQ EGKKRRQGFC HHPGMNGEEI CQAPGDDVSE 240 ISSQAASNSS GRVTLDLSLT VAAAAATTES STTDNSNGDD TQAGPAAAVA AREPARVFTC 300 NYCQRKFFSS QALGGHQNAH RRERTLARCA LRIDAAAPYG YFADVASLPL YGSGLYPIGI 360 QAHARARGLL APMPFFVGDD ELSFGWPRSF RPAAVAAEPA GSDIISAVVH AVEEPDLTLR 420 L

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MPGASTQATT PPSHRTEIHP SMDQAKSQSS GGNLQAGMLC RSEAKESQAA MHPNCFLRPQ  60
PPQSTRTRQG VATHRGMTKD PNAQRKGEAR TTLTKTSWRF TRSSPLAART PSRPPLSLSP  120
TDGWVANGDG GGFGFDAVKR RAEFCSLSLS LSLSAVCVVP EARGAFLPAA LNSWLCGTFV  180
DVVVALSFVK CLPSMTSSFM PGLLGLRVRQ EGKKRRQGFC HHPGMNGEEI CQAPGDDVSE  240
ISSQAASNSS GRVTLDLSLT VAAAAATTES STTDNSNGDD TQAGPAAAVA AREPARVFTC  300
NYCQRKFFSS QALGGHQNAH RRERTLARCA LRIDAAAPYG YFADVASLPL YGSGLYPIGI  360
QAHARARGLL APMPFFVGDD ELSFGWPRSF RPAAVAAEPA GSDIISAVVH AVEEPDLTLR  420
L

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9847	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-23	zinc finger protein 4