PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00002.1.g08340.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 358aa MW: 38209.3 Da PI: 9.7871

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00002.1.g08340.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.9	7.1e-38	73	169	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i Zjn_sc00002.1.g08340.1.am.mk 73 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 153 7*********************9989************************************************* PP DUF260 81 lklqqqleqlkaelal 96 ++lqqq + +++e+a+ Zjn_sc00002.1.g08340.1.am.mk 154 FALQQQQRAVRKEAAK 169 *******9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.847	72	174	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-37	73	168	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MPSIRFYTTI PPCLPLILSP PERRVLPRCL HPPPDLRLRA MSSGGCTSTP PGCGGGGGCP 60 SGSGGPGGGG GGPCGACKFL RRKCVSGCIF APYFDSEQGA AHFAAVHKVF GASNVSKLLL 120 QIPAHKRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQQ RAVRKEAAKP GTLLRAGTRR 180 ILRRRIVIPA VRCLPPPVAY YYAVVHLGLR IVLGWWCQRQ SLVVNLQAEL TYLQAHLATL 240 ELPSPPPLPA PPQMPVPAPF NIADLPSATN VPTTVDLSAL FDTPPQAHQW ASVQQQHHHQ 300 LRQPTMTSYG ASVRGGHGMA ESSSAGGGGD LQALARELLD RQRSGVKLES PPPPPPHS

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MPSIRFYTTI PPCLPLILSP PERRVLPRCL HPPPDLRLRA MSSGGCTSTP PGCGGGGGCP  60
SGSGGPGGGG GGPCGACKFL RRKCVSGCIF APYFDSEQGA AHFAAVHKVF GASNVSKLLL  120
QIPAHKRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQQ RAVRKEAAKP GTLLRAGTRR  180
ILRRRIVIPA VRCLPPPVAY YYAVVHLGLR IVLGWWCQRQ SLVVNLQAEL TYLQAHLATL  240
ELPSPPPLPA PPQMPVPAPF NIADLPSATN VPTTVDLSAL FDTPPQAHQW ASVQQQHHHQ  300
LRQPTMTSYG ASVRGGHGMA ESSSAGGGGD LQALARELLD RQRSGVKLES PPPPPPHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	69	166	7	103	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	69	166	7	103	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061431	1e-132	BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160420.1	3e-70	LOB domain-containing protein 30
TrEMBL	A0A0E0GJP4	5e-86	A0A0E0GJP4_ORYNI; Uncharacterized protein
STRING	ONIVA03G11070.1	8e-87	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP42174	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	1e-49	LOB domain-containing protein 18