PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00002.1.g06270.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 410aa MW: 42569.3 Da PI: 9.5905 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.2e-39 | 80 | 140 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt GG+lrnvPvGgg+r+nk+ss Zjn_sc00002.1.g06270.1.am.mk 80 PERALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTSGGSLRNVPVGGGCRRNKRSS 140 68899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-34 | 64 | 136 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.1E-33 | 82 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.721 | 84 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 86 | 122 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MVFTYLDPPI WNNQQGQQPR ASGGGDAPLL PVGPAAATGM APEATGLPSS STAAASAAGA 60 AQTRPNSMAE RARVARMPQP ERALKCPRCD STNTKFCYYN NYSLSQPRHF CKACRRYWTS 120 GGSLRNVPVG GGCRRNKRSS KSSSAGASSS SKPSSSARQL PSGPSSTPST PGGVTSGIIP 180 SGLNSLSHQY LPFLGSMQQP GGNLGLAFSA GLPPLGMQHV DTGDQFPVAS GGASLDQWRV 240 QQQHQVQFPF LAGGVLDLQP RPQMYQLGLE ANRVSSGSPA SAFTLGALGQ ANGTPARQEG 300 TMKLDLDDSK GQEMSLQRQY MAALRHGDGI WDGNAGGSGG DGGGNDGATW PMNIPGFRSS 360 STGDGGDHMA SDGGGAARRQ AEACVAPHAI GRPGHQRQRV LDATYQLTIM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791451.1 | 1e-139 | dof zinc finger protein DOF5.1-like isoform X2 | ||||
Swissprot | Q9M2U1 | 1e-46 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A2S3IRW0 | 1e-137 | A0A2S3IRW0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J14669.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12301 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 3e-40 | Dof family protein |