PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00002.1.g06060.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 34311.9 Da PI: 6.7768 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 9.9e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd++++ G ++W++ ++ g++R++k+c++rw +yl Zjn_sc00002.1.g06060.1.sm.mkhc 15 KGPWTPEEDKLLVDYIQKNGHRSWRRLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T eE++l+++++ lG++ W++Ia +++ gRt++++k++w+++l Zjn_sc00002.1.g06060.1.sm.mkhc 68 RGQFTDEEEKLIIHLHSVLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.067 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.24E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.765 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.22E-13 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGRSPCCDQE SGVKKGPWTP EEDKLLVDYI QKNGHRSWRR LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGQ FTDEEEKLII HLHSVLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLNM 120 GIDPVTHRPR TDLDLLASLP NLLAAASNTT WDINALKLQA DAAKFQLLQG LISAIAAAAA 180 PSVDLMALLA ASSAGLTQTV SVDRGSSRSS QYDGFMNLPA LTTAPTVSPG MTSFVGLLNG 240 FIGGSAHAGD GLSSTDLGQS GASGSSMTAA MAPPLVAAVA CNAGAGVATP CEETPASSPF 300 EELENLNLDD LSNDSWKDLL E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-31 | 15 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-31 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-31 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727665 | 1e-122 | KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811879.1 | 1e-174 | transcription factor MYB93-like | ||||
Swissprot | Q9S9Z2 | 2e-82 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A1E5W851 | 1e-176 | A0A1E5W851_9POAL; Transcription factor MYB39 | ||||
STRING | Si006790m | 1e-163 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5529 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 5e-78 | myb domain protein 9 |
Publications ? help Back to Top | |||
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