PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00002.1.g05520.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 354aa MW: 35825 Da PI: 8.2175 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.6e-39 | 40 | 100 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+ Zjn_sc00002.1.g05520.1.sm.mk 40 PEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 100 67899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.3E-33 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-28 | 44 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MASSTAVAAS GDDVAGPRKQ GTGGTTPPPA PQQQPPPPPP EQGLRCPRCD SPNTKFCYYN 60 NYSLSQPRHF CKTCRRYWTK GGALRNVPVG GGCRKNKRSR SAASASAAAV AAASSRLSLN 120 LPVEGIGGAS ADQQAAARLG FLGGGAPLPV VSSPIGAASA SDFHGGSAVG MMALPRFNAP 180 AVGHYVPFGE WPSAPGVDIS CGGGSGNGGH AMSGGQTGAV SSSIASSIES LSFINQDLHW 240 KLQQQRLATM FLGPPPSSGT TVHVEGAAAA PEHVGGPFLQ MAGTSTMEAV PAATSWFMDS 300 SYVLPPPPAT IVTTTNGNVQ SGRSSADDDN ATSNNNCGSA IPAWGDMSTF AMLP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947524 | 3e-86 | EU947524.1 Zea mays clone 346044 mRNA sequence. | |||
GenBank | KJ726977 | 3e-86 | KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796800.1 | 1e-116 | dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A3L6SBJ5 | 1e-119 | A0A3L6SBJ5_PANMI; Dof zinc finger protein DOF5.7-like | ||||
STRING | Si036311m | 1e-114 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 6e-33 | TARGET OF MONOPTEROS 6 |