PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g05450.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 449aa    MW: 48487.6 Da    PI: 8.3032
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g05450.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26064.42.8e-2053102150
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 
                                   +CaaCk+lrr+Ca++Cvlapyfp ++p+kf  +h++FGasn++kll+   
  Zjn_sc00002.1.g05450.1.am.mk  53 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQVRT 102
                                   7********************************************98654 PP
2DUF260508.7e-1613218646100
                        DUF260  46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                    ++lpe+ r da+ss+vyeAear+rdPvyG++g++ +lq+q ++lk++la++++ 
  Zjn_sc00002.1.g05450.1.am.mk 132 SQDLPESSRADAVSSMVYEAEARLRDPVYGCAGTVCRLQKQANELKVQLARAQAD 186
                                   6899**********************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.73152187IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-2053106IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-14132184IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDYSNASTGT TAEHSYRSES PPSLVSTSCS PPPPPLPAAQ LIGNVAPTVV MSPCAACKIL  60
RRRCADGCVL APYFPPTEPA KFTTAHRVFG ASNIIKLLQV RTVQSQASRA ARGHHNTYTH  120
GNVLTGAFVP ASQDLPESSR ADAVSSMVYE AEARLRDPVY GCAGTVCRLQ KQANELKVQL  180
ARAQADLLNA QAQHANLLAL VCVEVANRRD SQRQQQQPSP PLMEYGGSRS EVGDAGYQMF  240
YDDSDLLDSA TWPLEPDRAG CQAHRCVHHT GHAHSAKKTE DELVTRAAIT KETKRRPPNS  300
IVPNSLGLTR RDARASDARC HGSSSSAKEG AASQRRKSIV TISLVRLLFD HGYLEIAYGS  360
VSDSYEVADG VSLESRRMNP KHPWIHMPTV QGEGVWRPDE LLPIFWKPGT VTAMASSVGR  420
GVASTEQTEG SLRCAARTVV PGDATLKSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-325218810112LOB family transfactor Ramosa2.1
5ly0_B2e-325218810112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370746e-79AC137074.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence.
GenBankAK0725156e-79AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence.
GenBankAP0149596e-79AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126116e-79CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8321436e-79CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987050.26e-95LOB domain-containing protein 1
TrEMBLA0A368SSE31e-93A0A368SSE3_SETIT; Uncharacterized protein
STRINGPavir.Ib01336.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-45LOB domain-containing protein 1