PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g04260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 644aa    MW: 69028.5 Da    PI: 9.3939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g04260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-17196243148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rgrWT+eEde l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00002.1.g04260.1.am.mk 196 RGRWTAEEDEVLASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 243
                                   89******************************99************97 PP
2Myb_DNA-binding28.24.4e-093593832248
                                   T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqkyl 48 
                                   g W++Ia++++ gRt++++k++w+++l
  Zjn_sc00002.1.g04260.1.am.mk 359 G-WSLIASHLP-GRTDNEIKNYWNSHL 383
                                   5.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-22187246IPR009057Homeodomain-like
PROSITE profilePS5129422.044191247IPR017930Myb domain
SMARTSM007172.8E-12195245IPR001005SANT/Myb domain
PfamPF002493.0E-15196243IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-20197270IPR009057Homeodomain-like
CDDcd001672.71E-10198243No hitNo description
Gene3DG3DSA:1.10.10.601.2E-18247267IPR009057Homeodomain-like
SMARTSM007175.1E-10248385IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-18356387IPR009057Homeodomain-like
SuperFamilySSF466892.84E-7358388IPR009057Homeodomain-like
PfamPF002494.7E-7359383IPR001005SANT/Myb domain
CDDcd001671.88E-6360383No hitNo description
PROSITE profilePS500906.632360383IPR017877Myb-like domain
PfamPF066407.8E-64401621IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MQRRGHLVAG GSARARNPGP LPADRSVAST PPYCAAITCE QPGSRGTSGE SIAMHSDTLL  60
PVPSGYEQAG PRITSTTASK QAQSYRVPTT WSPARPRSGT VVSPGATVPS PRARTRARGS  120
SHTAARPGLH LVTATHVNVG SIAAPPAAAR GVTLLRGRLS VSAGRRAVGR RPAGDFYISR  180
AKMGRAPCCE KVGLKRGRWT AEEDEVLASY IAKHGEGSWR SLPKNAGLLR CGKSCRLRWI  240
NYLRADVKRG NISKEEEDII IKLHATLGNR AGRMESTAGG QLASMVITAD RLTEEPISIN  300
LLGAVGARVR RVHSLLLLLL LACHAVTLEA TRVAHAWHGM ACSPDHLTPP SSRFVKYSGW  360
SLIASHLPGR TDNEIKNYWN SHLSRQIHTY RRIYTAGNDT TITIDITKLH SQEKRRGGRT  420
PGRSRKSRDK ITTSRGKRAD PEPEPAEQSG KLEKRVDASS PVAAMSSPPQ SDDGARSAVV  480
DPDGPNQRTN SVDVDGNTPG HGGPCSEDAT GPVEMEPLDI GLWEAESEMD MEALLLSTTG  540
TGSIGDGSGS FATGLVDAVG EAPVDDLLDM DWDGFAAHLW GDPGQNEQND HRGTAQAAEP  600
RAAAGCDPEP EELESFATWL LRTRRTCTHV SRRFFVERHP GVSG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU570023e-85U57002.1 Zea mays P protein (P) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797897.12e-71myb-related protein P-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-46myb domain protein 111