PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00002.1.g02180.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 223aa MW: 24744.6 Da PI: 7.2543 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.4 | 7.4e-09 | 35 | 73 | 13 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 NR +A rs +RK +i eLe+kv++L++e ++L +l Zjn_sc00002.1.g02180.1.am.mkhc 35 NRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 73 *********************************988865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.9E-8 | 22 | 87 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-10 | 30 | 78 | No hit | No description |
CDD | cd14703 | 1.32E-20 | 32 | 77 | No hit | No description |
Pfam | PF00170 | 3.3E-7 | 34 | 71 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.036 | 35 | 88 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-6 | 35 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGADDDWEKG GGLKVTSSAC SLRICCRSAN IILANRQSAA RSKERKARYI TELERKVQTL 60 QTEATTLSAQ LTLFQRDTTG LSAENAELKI RLQAMEQQAQ LRDALNDALK QELERLKLAT 120 GEVTNSDDTY NMRFQHVPYN SSFFPLSQQN TAQHQGSVQL PPAFHPPHHN VPNHHMISHP 180 NTLQDIMQQD SIGRFQGLDI GKGPPIVKSE SSSISASESS SNF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984459.1 | 1e-111 | transcription factor RF2b | ||||
Refseq | XP_025795608.1 | 1e-111 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 1e-103 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A1E5USX9 | 1e-111 | A0A1E5USX9_9POAL; Transcription factor RF2b | ||||
STRING | Pavir.Ib01574.1.p | 1e-112 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.1 | 5e-55 | basic leucine-zipper 52 |
Publications ? help Back to Top | |||
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