PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00001.1.g12390.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 24957.9 Da PI: 9.6863 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 70 | 119 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrd + ng +r++lg+f++ae Aa a+++a+++ +g Zjn_sc00001.1.g12390.1.am.mk 70 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSAEAAAMAYDQAALSARG 119 57******.**********44465..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.931 | 69 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-31 | 69 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-21 | 70 | 129 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.33E-16 | 70 | 128 | No hit | No description |
PRINTS | PR00367 | 3.4E-8 | 70 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 70 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-28 | 70 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEHPQGYFLY SQADHTATAA MSSSSSSSSD YLSFNTIGSG DAVPAPTSVP AAAAVARRER 60 ERASPNKEAF IGVRRRPWGR FAAEIRDSTR NGARVWLGTF DSAEAAAMAY DQAALSARGP 120 SAALNFPVER VRESLHALAL GGAAACGGSP VLELKSRHSK RKRRKKSEII AAAAAAVNGT 180 VLGRNKAKNK GALAEQKRFV VELEDLGSEY LEELLRISEF DDQGLQELHR DQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-23 | 70 | 129 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 164 | KRKRRK |
2 | 159 | 165 | KRKRRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571392.2 | 2e-53 | ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A2K2CX69 | 1e-51 | A0A2K2CX69_BRADI; Uncharacterized protein | ||||
STRING | Pavir.Ba02374.1.p | 6e-56 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-23 | ethylene response factor 1 |