PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00001.1.g08980.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 773aa MW: 80943.3 Da PI: 11.3223 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.9 | 2.3e-38 | 474 | 532 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s Zjn_sc00001.1.g08980.1.am.mk 474 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRS 532 57899****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 471 | 530 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.9E-33 | 476 | 531 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 477 | 531 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 479 | 515 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 773 aa Download sequence Send to blast |
MQSRAEAALQ QGRTTRAGER RQLHGRYTYR QPQPTAGWSG SIDRLARPAG VPSLASRARS 60 IAPRLMRRIL LFRQRRNPDR VSTLTARAST TYRGTVHGTR CSCTVPRQVR RASGVAVDDT 120 AGPRLEHDFH APLLQVRPGR MMSVSDTAVV VVASEVVAVR ARPHALSCAR APVDPHRAHA 180 RGVHRRPPPS GARSRPAIDL RFLCWNPRGH EDPFLPSRTR LEYGLGHCVY PLSLSPYDDR 240 SGGDAARLVS RGSARLGSPG PADTRAPRAR QSAADVVFPF SLSLSLSLSL SGGRSARERT 300 PFPRRARGTP GASSESSGPS QGVKNRGRTP CTGEKREPTR VGELFFSGAA KKLRPEPRDS 360 QRRGAPLTGL LLSSPGLLPR DDVIVGYKTR LSGVQPLLSL FIQLGSRRSD RLAPSSTDLC 420 PGRFVSQAAS ICALRRRARE MAGAGGATAV QQPSAGAGKS GTGAAGAPVV DPRAEALRCP 480 RCDSANTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RSRTSAASAA 540 GRTVSSAAAA GATSSSAASA LSLPPPAGVS SSMQSLTSAL GLSGGTSLAS LLLGGGSGAD 600 HLGLFQAAMQ SVVSDTTAYE MQQQTQTQVD HLLGLGGYGS GAAGAQIQLK PWIQDSGAGA 660 GGIMDTFYAP LLSGSVVPGL EELHVKAEAA GAGEHQQAKV DAGAGDQNSW ELPTPSSTSN 720 IIASDALMAA AAASMTNNPA PSSFMYWGNG GIGGAAASWP DLANCGSSIA TLF |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8895 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60200.1 | 2e-31 | TARGET OF MONOPTEROS 6 |