PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g07600.1.es.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 570aa    MW: 64096 Da    PI: 6.5159
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g07600.1.es.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.31.6e-1282035694373
                            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                     lL++cAea+s++  ++ q+l+++ +   s +gdp+qRl ay++e+L ar  +s++++y+al++++ +   s e l+++k
  Zjn_sc00001.1.g07600.1.es.mkhc 203 LLTKCAEALSEDRIAEFQKLVQEARGVISITGDPIQRLGAYLLEGLVARHGNSGTNIYRALKCRKPE---SNELLSYMK 278
                                     799***************************************************************9...99******* PP

                            GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeele 159
                                     ++++++P+lkf++++aN aI ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l 
  Zjn_sc00001.1.g07600.1.es.mkhc 279 ILYNICPYLKFGYMAANGAIAEALRNEDRIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLD 357
                                     ********************************************************************999999***** PP

                            GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                      +g+ L+++ ee+++p+ef++l     ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+l Pkv
  Zjn_sc00001.1.g07600.1.es.mkhc 358 IVGKMLKSMSEEFKIPLEFTPL-PVYATQVTNEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLAPKV 435
                                     *********************6.77788999************************************************ PP

                            GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                                      ++veqe+ +n+++Fl rf+e+++yysa+f+s++a+lpres+eri+vE+++l+++ivn++aceg++r+erhe l+kW++
  Zjn_sc00001.1.g07600.1.es.mkhc 436 TTLVEQESHTNTTPFLMRFAETMDYYSAMFESIDANLPRESKERINVEQHCLAKDIVNIIACEGKDRVERHELLGKWKS 514
                                     ******************************************************************************* PP

                            GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                     rl++aGFkp+pls+++++ ++ ll+ ++ d y++ee++g+++lgWk+r+L+s+SaW
  Zjn_sc00001.1.g07600.1.es.mkhc 515 RLTMAGFKPYPLSSYVNSVIRKLLACYS-DKYTLEEKDGAMLLGWKSRKLISASAW 569
                                     ************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.067174551IPR005202Transcription factor GRAS
PfamPF035145.6E-126203569IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDLQQLLKYR LTCANVFYGI PSDNNLANSP WLASSLKSEF SNSPYTPLSS QLECDNLSAL  60
SNTPDNQSST ETISAQPISP LEADSSYRQA GIILRENIQV RPDPLYATSR HNMQHALREI  120
ETVLMAPDAD DAATGTKHEI EENKPAQLMR QRSRTCSHES RQPSPGVVWP HFAAGYPSAS  180
YEFRPEKRQR ELREDPQNIV KLLLTKCAEA LSEDRIAEFQ KLVQEARGVI SITGDPIQRL  240
GAYLLEGLVA RHGNSGTNIY RALKCRKPES NELLSYMKIL YNICPYLKFG YMAANGAIAE  300
ALRNEDRIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEY ARGEGLDIVG  360
KMLKSMSEEF KIPLEFTPLP VYATQVTNEM LEIRPGEALA VNFTLQLHHT PDESVDVNNP  420
RDGLLRMVKG LAPKVTTLVE QESHTNTTPF LMRFAETMDY YSAMFESIDA NLPRESKERI  480
NVEQHCLAKD IVNIIACEGK DRVERHELLG KWKSRLTMAG FKPYPLSSYV NSVIRKLLAC  540
YSDKYTLEEK DGAMLLGWKS RKLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-721845693378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800433.10.0chitin-inducible gibberellin-responsive protein 1 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2S3H3090.0A0A2S3H309_9POAL; Uncharacterized protein
TrEMBLA0A2T7EX230.0A0A2T7EX23_9POAL; Uncharacterized protein
STRINGSb02g035680.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-180GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]