PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g07040.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 535aa    MW: 58252.1 Da    PI: 10.2148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g07040.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.9e-13166201137
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                                   +g+WT+eEde+lv ++k++G g+W+t ++  g +R+l
  Zjn_sc00001.1.g07040.1.am.mk 166 KGPWTAEEDEKLVAYIKKHGQGNWRTLPKNAG-KRSL 201
                                   79******************************.9997 PP
2Myb_DNA-binding26.61.4e-082042282247
                                   T-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqky 47 
                                   ++W++Ia++++ gRt++++k++w+++
  Zjn_sc00001.1.g07040.1.am.mk 204 DRWSAIAARLP-GRTDNEIKNFWNTH 228
                                   57*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-11161200IPR009057Homeodomain-like
PROSITE profilePS5129419.389161233IPR017930Myb domain
SuperFamilySSF466895.13E-15163225IPR009057Homeodomain-like
SMARTSM007176.9E-19165231IPR001005SANT/Myb domain
PfamPF002491.1E-9166200IPR001005SANT/Myb domain
CDDcd001673.88E-14168229No hitNo description
Gene3DG3DSA:1.10.10.601.8E-11204240IPR009057Homeodomain-like
PfamPF002497.1E-7204228IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDDDAALRTV SRFFDCRSEA LDSALRPARR PLTPLPRTPR RLAIARASRR ATFGAWGCSA  60
VTVGLLTFYP PRPTPRWIPR AADPRCVSTS AVPRGAARPR RGRGTQMPAP NPVDFAPPSR  120
SRAYKGPPVL HLNLLSSFLA SGSDRSGSSS IQMGRAPCCE KTGLKKGPWT AEEDEKLVAY  180
IKKHGQGNWR TLPKNAGKRS LSSDRWSAIA ARLPGRTDNE IKNFWNTHIR KRLLRMGIDP  240
VTHAPRLDLL DLSSLLKPAA AAYYPTQADL DTLRAFEPLA NYPDLLRLAS ALLAGTPAVA  300
DHQQQLLPWL LHQAQMTQQA AAAAMTAQQV TPPTTQADQF MQQTACQMSG LFHANPTTTT  360
MQQMAVQQQQ QQQIHQDTTA ACHSVPPPPS YVDSLLDMPA LMQMVQQQSD ASNLQQQWSS  420
TVTSSNNNVG GSGVSTPSFS PVTRLSSNSI TAATTYDATT NEAAALFNMQ LSDLLDVSDY  480
IVAEVASHDW VTRPLSLSFC VTNLSPVKKN RARSAFAGRG CMSHSSPDPL ARLTP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-102CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802158.11e-121transcription factor MYB102-like
TrEMBLA0A2S3H3C91e-119A0A2S3H3C9_9POAL; Uncharacterized protein
STRINGPavir.J38204.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-47MYB-like 102