PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g05720.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 721aa    MW: 78397.7 Da    PI: 7.3788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g05720.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-057496123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ Cgk F r  nL+ H r H
  Zjn_sc00001.1.g05720.1.sm.mk 74 FVCEVCGKGFQRDQNLQLHRRGH 96
                                  89******************988 PP
2zf-C2H212.30.0005153174223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                    Cp Cgk++  + + k H +t+
  Zjn_sc00001.1.g05720.1.sm.mk 153 ACPRCGKRYAVQADVKAHAKTC 174
                                   6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.18E-87396No hitNo description
SMARTSM003550.0147496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-57496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6357496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035577117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.18E-8147172No hitNo description
SMARTSM00355180152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MTRNSMEPEA GHEHPGPGPA EAPSAAAPVK KKRNLPGTPV LLAPAASAPC ARAADPDAEV  60
IALSPGTLLA TNRFVCEVCG KGFQRDQNLQ LHRRGHNLPW RLRQRGPGAE PPRRRVYVCP  120
VPGCVHHSPA RALGDLTGIK KHFCRKHGEK LWACPRCGKR YAVQADVKAH AKTCGTREYR  180
CDCGTLFTRK DSFVTHRAFC GALVEETGRA LAVPAPPSPR PPDLEAEDNV DKDKKKREEN  240
ENSAVAEKEQ LPCAKALAEK PQHIQSPPPL PQEPQHNPSS PPLAQEPQPL HSRPPLTQQP  300
QPLRSGPPLP QEPKQHRSRP LLTQEPQPLR SRPPLPQEPQ PHCPRPPFPK EEPVVALVPN  360
VEEPKMVAEP ALIAKQEEEA DEDEGTCLQE ADQYKDTELE STNLLYKNMP MLPCFLPSPS  420
EAIGTDAIST TCGAGGSVSN SIAPSTTTNT FAGLFASATK STTSQSRSLR DLIGVDPTFL  480
CLAIGSPSPL FPQTNASSPC TFAPPQAPHM SATALLQKAT EVGASQSSSS FLKEFDLGSS  540
SSSSLLSKPP QGRFNDNNTQ QWHHRSKQQV EMEHYWSNQR MEMELPRSSQ QMEMELPRSN  600
QQMEMEHRWS NQQMVMEHNW SNQQMEIGPR SMLSSSLGLD LACQSGNSGL PELMMGPSSL  660
FGPKPATLDF LGLGIGGTIG GSTANGGLPA LMVRGELDMG SAQTPAPWED GKRKTNGRTI  720
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-28148209364Zinc finger protein JACKDAW
5b3h_F1e-28148209364Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983991e-169FP098399.1 Phyllostachys edulis cDNA clone: bphyem204a15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155452.10.0protein indeterminate-domain 1-like
TrEMBLA0A0E0EDM50.0A0A0E0EDM5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I2V20.0A0A0E0I2V2_ORYNI; Uncharacterized protein
STRINGOMERI07G17050.10.0(Oryza meridionalis)
STRINGONIVA07G18460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.29e-78C2H2 family protein