PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g05700.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 381aa    MW: 41905.9 Da    PI: 6.4539
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g05700.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1862115356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++++eq+e Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Zjn_sc00001.1.g05700.1.am.mk  62 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 115
                                   45589***********************************************99 PP
2HD-ZIP_I/II113.31.6e-3662152292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++ +Lk+a+da   ++++Le+
  Zjn_sc00001.1.g05700.1.am.mk  62 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFVKLKQAHDAAILHKCHLEN 142
                                   9******************************************************************************** PP

                   HD-ZIP_I/II  83 eveeLreelk 92 
                                   ev +L+e+l+
  Zjn_sc00001.1.g05700.1.am.mk 143 EVLRLKERLM 152
                                   ******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.47157117IPR001356Homeobox domain
SMARTSM003894.9E-1760121IPR001356Homeobox domain
SuperFamilySSF466892.82E-1661116IPR009057Homeodomain-like
CDDcd000862.75E-1562117No hitNo description
Gene3DG3DSA:1.10.10.609.8E-1862115IPR009057Homeodomain-like
PfamPF000465.9E-1662115IPR001356Homeobox domain
PRINTSPR000312.6E-58897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000312.6E-597113IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEQYAEQQHQ LFPSSFVDLD SSLLAATGAA QGEERPRARR RRRRAARCGG ADGVEVDAED  60
PKKRRLSDEQ VEMLELSFRE ERKLETGRKV HLAAELGLDP KQVAVWFQNR RARHKSKLLE  120
EEFVKLKQAH DAAILHKCHL ENEVLRLKER LMVAEEELTR LRSAGSHAIS GDGVDVMGRV  180
VCSGSPSSSF SAGICHQQLG VGGVDDDLIY VPDVADYVHA DNTVVEWFSL FGLMEFYLGS  240
PCIRGRKRPS HELAFQFTSP WSIEANAPIE TAAPGSFVEE DITISDKVPG ASAATLARSD  300
TREHATRTAD LAVQATAGRA IDALNMGTAT SELIKPLEQR PRPSRRSHSP QPQAFLQQPD  360
KQQAITDATG DTNAAGGHAR S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13443RPRARRRRRR
23846RRRRRRAAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9445171e-155EU944517.1 Zea mays clone 221396 mRNA sequence.
GenBankEU9536261e-155EU953626.1 Zea mays clone 1440579 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460922.12e-93homeobox-leucine zipper protein HOX14
SwissprotQ7XI851e-83HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A1E5VQE42e-94A0A1E5VQE4_9POAL; Homeobox-leucine zipper protein HOX14
STRINGMLOC_77488.18e-93(Hordeum vulgare)
STRINGSb02g037560.18e-93(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-38homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]