PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g05030.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 542aa    MW: 59286.7 Da    PI: 5.7465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g05030.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.71.8e-921495392373
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaa 80 
                                   ++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+  L +r +    ++ + +a++   +s   ++++++a
  Zjn_sc00001.1.g05030.1.am.mk 149 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDTNQRLTAAFLCSLITRASLtgACKAVTAAVADAVESAALHVHRFTA 229
                                   79**********************************************888654115566665554444444457777777 PP

                          GRAS  81 lkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....sk 155
                                   ++l  f +++P+++f++ +aN  Ileaveg   vHi+D++ ++++Q p+L++ LasR+egpp lR+T+ + +++       
  Zjn_sc00001.1.g05030.1.am.mk 230 VELarFIDLTPWHRFGYTAANASILEAVEGFPIVHIVDLSTTHCMQIPTLIDMLASRAEGPPILRLTVADVASNApppaLD 310
                                   77799***************************************************************9998888887777 PP

                          GRAS 156 eeleetgerLakfAeelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......e 223
                                    ++  +g +L +fA++ +++++f+v+        ++ +++l++++L  +  Eal+Vn+++ lh+++de++ + s       
  Zjn_sc00001.1.g05030.1.am.mk 311 MSYDDLGAKLVNFAQSRNMSLDFQVVptspadaFTSLVDQLRVQQLVSDGTEALVVNCHMLLHTVPDETAGSVSlaqpvsL 391
                                   78899*********************888666555566777888887777****************998777666657777 PP

                          GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                   r+ +Lk +++l+P +vvvve++ad ++++ + r+ +a+++++  fd++++ lp+ se+r+++E+e ++++++nv+a+eg e
  Zjn_sc00001.1.g05030.1.am.mk 392 RTMLLKSIRTLEPSLVVVVEEDADFTASDVVGRLRSAFNFMWIPFDAVDTFLPNGSEQRRWYEAE-VRWKVENVLAQEGVE 471
                                   999**************************************************************.9************** PP

                          GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   r+er+e  ++W +r+++aGF++v+++e+aa ++k++l++++  g+ ++ e++ lvl+Wk++++v++SaW
  Zjn_sc00001.1.g05030.1.am.mk 472 RVERQEDRARWGQRMRSAGFRAVAFNEEAAGEVKAMLNEHA-AGWGMKREDDDLVLTWKGHNVVFASAW 539
                                   *****************************************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.082122521IPR005202Transcription factor GRAS
PfamPF035146.2E-90149539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MHRSDGSNQG AHTDNQTTPL QLLSHQLRIP SACRHAFGLL MSGAYPPAGE RLADALRHMQ  60
HPSRVHGAPH ILPLNVYELC LLPVFESSPQ PCWFVSFSLA TCLGPYMMQF MHTMPPPTPL  120
LSNNGHGLGV PTPSSKISLG NLNSTSCMEQ LLVHCANAIE ANDATLTQQI LWVLNNIAPP  180
DGDTNQRLTA AFLCSLITRA SLTGACKAVT AAVADAVESA ALHVHRFTAV ELARFIDLTP  240
WHRFGYTAAN ASILEAVEGF PIVHIVDLST THCMQIPTLI DMLASRAEGP PILRLTVADV  300
ASNAPPPALD MSYDDLGAKL VNFAQSRNMS LDFQVVPTSP ADAFTSLVDQ LRVQQLVSDG  360
TEALVVNCHM LLHTVPDETA GSVSLAQPVS LRTMLLKSIR TLEPSLVVVV EEDADFTASD  420
VVGRLRSAFN FMWIPFDAVD TFLPNGSEQR RWYEAEVRWK VENVLAQEGV ERVERQEDRA  480
RWGQRMRSAG FRAVAFNEEA AGEVKAMLNE HAAGWGMKRE DDDLVLTWKG HNVVFASAWA  540
PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-5114954188474Protein SHORT-ROOT
5b3h_B1e-5114954134420Protein SHORT-ROOT
5b3h_E1e-5114954134420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460950.10.0scarecrow-like protein 32
SwissprotQ9SN221e-162SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1E5V0370.0A0A1E5V037_9POAL; Scarecrow-like protein 32
STRINGSb02g038040.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-161GRAS family protein