PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00001.1.g04990.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 995aa MW: 106299 Da PI: 11.011

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00001.1.g04990.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk F + L H+ +H Zjn_sc00001.1.g04990.1.am.mk 84 FRCALCGKAFASYQALGGHMASH 106 89******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.017	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.575	84	111	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.91E-7	84	158	No hit	No description
Pfam	PF13912	6.4E-11	84	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.0E-7	135	158	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.93	136	163	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.1	136	158	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence Send to blast
MTANRRRPKA RVRAVEYLLP ESRLQRSPEL VGAITSRGVM RQGEYLSLYL TALAAARRAE 60 HRVHGAPQPS APAPVTSSAP PLDFRCALCG KAFASYQALG GHMASHRKPG TAPPFVQNED 120 ATPSAAGEEG EPRRRHVCTV CRRGFATGQA LGGHKRFHYL HGPSVSASLR TEAGSRAGWF 180 DLNAAPVDCV KGDDEGEEAQ SRCGPAKKKQ RRGPGKTGRQ PWTQDTTGPL LPSALAVAAS 240 LPYPVLVVSA SLWCRLLPPT DGTKSYSWFQ ILNDSMLCHL FPCVLGWLVD VDPNHVAPTQ 300 IFVPVSEREL QYSGHSPAPL RLCEMPNLPI AAAATTNPPF LAAQRTKTIM RTQRLTIDAQ 360 LGTANFSGPF SGWSGLQLRI VLALVPASVT GGVHSAPAAA IHGARARSLM IGEWNYCYCT 420 QRGNDPGIDR HAAPAASVWY HRVVAHGAAG RLGQQRNEAE RGRHGTACRR PPCRLQVTVN 480 EASASQRRYR LVKEYGRAQR EQRTAVSAAT SSPAGPGAAA SSDAAGALAF FDLAGASATG 540 AGAGAFDFFF LEEDGDFFFF LDGAGAGTSA GLLGAEAGGS STGAGGVAAS GAGAGGDAGG 600 GEAFAFALPL GAGAGAEDLA VGWRWWWAPR PVRRPSAQRR KRLGGRGARG RERRRAPLRW 660 WSGRLCSARC GASGGVGRMS LVAEGKARRR PEMPRRNCAT AWEPLVVVLV GASVLPSWVV 720 TARRYLACCI SRRSPCKGTC DDRLHEARSP QTKHSTCRIS MRSDSHYTNG AGACIVSRRG 780 YFCSYRSVAM DWDATLHTRG AEKVDAIEYK RQSARRDLLF HAPAMLTCRS RQLSRTSSID 840 AAQRCRGNSN TTIFPTVGNL ALQATVNRSR LPVTAVVLAV LTHCLGDYGR STPKAAGVKR 900 NLTDPPARAT KRAGQGSIIM RVTNPGDARG SRGRNNLPAP SGHQASQFQV VAELCKLPRA 960 TLTACCGGSR HERRQHLRGG FPASSRRRSR RGADA

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence Send to blast

MTANRRRPKA RVRAVEYLLP ESRLQRSPEL VGAITSRGVM RQGEYLSLYL TALAAARRAE  60
HRVHGAPQPS APAPVTSSAP PLDFRCALCG KAFASYQALG GHMASHRKPG TAPPFVQNED  120
ATPSAAGEEG EPRRRHVCTV CRRGFATGQA LGGHKRFHYL HGPSVSASLR TEAGSRAGWF  180
DLNAAPVDCV KGDDEGEEAQ SRCGPAKKKQ RRGPGKTGRQ PWTQDTTGPL LPSALAVAAS  240
LPYPVLVVSA SLWCRLLPPT DGTKSYSWFQ ILNDSMLCHL FPCVLGWLVD VDPNHVAPTQ  300
IFVPVSEREL QYSGHSPAPL RLCEMPNLPI AAAATTNPPF LAAQRTKTIM RTQRLTIDAQ  360
LGTANFSGPF SGWSGLQLRI VLALVPASVT GGVHSAPAAA IHGARARSLM IGEWNYCYCT  420
QRGNDPGIDR HAAPAASVWY HRVVAHGAAG RLGQQRNEAE RGRHGTACRR PPCRLQVTVN  480
EASASQRRYR LVKEYGRAQR EQRTAVSAAT SSPAGPGAAA SSDAAGALAF FDLAGASATG  540
AGAGAFDFFF LEEDGDFFFF LDGAGAGTSA GLLGAEAGGS STGAGGVAAS GAGAGGDAGG  600
GEAFAFALPL GAGAGAEDLA VGWRWWWAPR PVRRPSAQRR KRLGGRGARG RERRRAPLRW  660
WSGRLCSARC GASGGVGRMS LVAEGKARRR PEMPRRNCAT AWEPLVVVLV GASVLPSWVV  720
TARRYLACCI SRRSPCKGTC DDRLHEARSP QTKHSTCRIS MRSDSHYTNG AGACIVSRRG  780
YFCSYRSVAM DWDATLHTRG AEKVDAIEYK RQSARRDLLF HAPAMLTCRS RQLSRTSSID  840
AAQRCRGNSN TTIFPTVGNL ALQATVNRSR LPVTAVVLAV LTHCLGDYGR STPKAAGVKR  900
NLTDPPARAT KRAGQGSIIM RVTNPGDARG SRGRNNLPAP SGHQASQFQV VAELCKLPRA  960
TLTACCGGSR HERRQHLRGG FPASSRRRSR RGADA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243238	2e-37	AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14898	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43170.1	1e-20	zinc-finger protein 3